Table 2 List of miRNAs with nucleotide variations between Vitis amurensis Rupr. and Vitis vinifera
MiRNA | Vitis amurensis Rupr. | MiRbase 16.0 (Vitis vinifera) |
|---|---|---|
MiR156a/i | TTGACAGAAGAGAGGGAGCAC | TGACAGAAGAGAGGGAGCAC |
MiR159a/b | CCTTGGAGTGAAGGGAGCT | CTTGGAGTGAAGGGAGCTCTC |
MiR166a | TCTCGGACCAGGCTTCATTCC | TCGGACCAGGCTTCATTCCTG |
MiR166c/e/h | TCGGACCAGGCTTCATTCCCC | TCGGACCAGGCTTCATTCCCCC |
MiR166d/f/g | TCGGACCAGGCTTCATTCCCC | TCGGACCAGGCTTCATTCCCCT |
MiR167a | TGAAGCTGCCAGCATGATCT | TGAAGCTGCCAGCATGATCTG |
MiR167b/e | TGAAGCTGCCAGCATGATCTAA | TGAAGCTGCCAGCATGATCTA |
MiR169b/h | TGAGCCAAGGATGGCTTGCCGT | TGAGCCAAGGATGGCTTGCCG |
MiR169e | TAGCCAAGGATGACTTGCCT | TAGCCAAGGATGACTTGCCTG |
MiR169i | TGAGCCAAGGATGACTGGCCGT | GAGCCAAGGATGACTGGCCGT |
MiR169l | TGAGCCAAGGATGACTTGCCG | GAGCCAAGGATGACTTGCCGT |
MiR169m/p | TGAGCCAAGGATGACTTGCCG | GAGCCAAGGATGACTTGCCGG |
MiR169n/q | TAGAGCCAAGGATGACTTGCCG | GAGCCAAGGATGACTTGCCGG |
MiR169o | TGAGCCAAGGATGACTTGCCG | GAGCCAAGGATGACTTGCCGC |
MiR169r | TGAGTCAAGGATGACTTGCCGA | TGAGTCAAGGATGACTTGCCG |
MiR169t | CGAGTCAAGGATGACTTGCCGA | CGAGTCAAGGATGACTTGCCG |
MiR169x | TAGCCAAGGATGACTTGCCT | TAGCCAAGGATGACTTGCCTA |
MiR171a | TGATTGAGCCGTGCCAATATC | TTGAGCCGTGCCAATATCATG |
MiR171b | TTGAGCCGCGTCAATATCTCC | TGATTGAGCCGCGTCAATATC |
MiR171c/d | TGATTGAGCCGTGCCAATATC | TTGAGCCGTGCCAATATCACG |
MiR171e | TTGAGCCGCGCCAATATCACT | TGATTGAGCCGCGCCAATATC |
MiR171h | TTGAGCCGCGCCAATATCCCG | TGGTTGAGCCGCGCCAATATC |
MiR172d | TGAGAATCTTGATGATGCTGC | AGAATCTTGATGATGCTGCAT |
MiR319b | TTGGACTGAAGGGAGCTCCCT | CTTGGACTGAAGGGAGCTCCC |
MiR319c/f | TGCTTGGACTGAAGGGAG | CTTGGACTGAAGGGAGCTCCC |
MiR319g | TTGGACTGAAGGGAGCTCCC | ATTGGACTGAAGGGAGCTCCC |
MiR393a/b | TCCAAAGGGATCGCATTGAT | TCCAAAGGGATCGCATTGATCC |
MiR396a | TTCCACAGCTTTCTTGAA | TTCCACAGCTTTCTTGAACTA |
MiR396b | TTCCACAGCTTTCTTGAA | TTCCACAGCTTTCTTGAACT |
MiR396c/d | TTCCACAGCTTTCTTGAA | TTCCACAGCTTTCTTGAACTG |
MiR398a | TTCTCAGGTCACCCCTTTGGG | TGTGTTCTCAGGTCACCCCTT |
MiR399a | CAAAGGAGAATTGCCCTGTTA | TGCCAAAGGAGAATTGCCCTG |
MiR399d | AAAGGAGATTTGCTCGTGAAT | TGCCAAAGGAGATTTGCTCGT |
MiR399h | TGCCAAAGGAGAATTGCC | TGCCAAAGGAGAATTGCCCTG |
MiR403a/b/c/d/e/e\f | TTAGATTCACGCACAAACT | TTAGATTCACGCACAAACTCG |
MiR482 | TCTTTCCTACTCCTCCCATTCC | CCTACTCCTCCCATTCC |
MiR535a/b/c/d/e | TGACAACGAGAGAGAGCACGC | TGACAACGAGAGAGAGCACGCT |