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Table 4 Comparison of biofilm to reactor, planktonic culture

From: Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

DVU Gene #

Gene Name

Description

Log2ratio (z-score)

0799

-

-

3.65 (4.78)

0797

-

-

3.08 (4.02)

0587

fdn G-1

formate dehydrogenase, alpha subunit

2.59 (3.38)

1817

cyf

cytochrome c553

2.44 (3.18)

2135

-

hypothetical protein

2.39 (3.11)

2442

-

Hsp family

2.30 (2.99)

0251

-

putative membrane protein

2.20 (2.86)

0588

hyb A

formate dehydrogenase, beta subunit

2.11 (2.74)

2410

sod B

superoxide dismutase, Fe

2.02 (2.63)

2100

-

universal stress protien

1.85 (2.40)

A0115

-

-

1.81 (2.34)

2543

b0873

hybrid cluster protein

1.80 (2.34)

0429

ech F

EchF

1.75 (2.27)

0430

ech E

EchE

1.66 (2.15)

2441

hsp C

Hsp20 family

1.63 (2.10)

1067

-

Bmp family membrane protein

1.60 (2.07)

1876

dna J

DnaJ

1.56 (2.02)

0467

trp D

anthrnilate phosphoribosyltransferase

-1.52 (-2.06)

0415

pep A

cytosol aminopeptidase

-1.55 (-2.10)

3027

glc D

glycolate oxidase

-1.80 (-2.43)

2590

-

sensory box protein

-1.81 (-2.44)

0494

-

aminotransferase V

-1.82 (-2.47)

1257

-

RNA-binding protein

-2.00 (-2.69)

0318

-

TPR domain protein

-2.23 (-3.00)

  1. This table lists all proteins that were significantly increased or decreased (|z| ≤ 2) when biofilm cells were compared to reactor, planktonic cells.