Skip to main content

Table 6 Top 10 Xl-PSIDs in each inner ear gene category

From: Probing the Xenopus laevis inner ear transcriptome for biological function

6A. IET/Xl-PSID

6B. DF/Xl-PSID

Xl-PSID

Average intensity

Rank

IET HGNCs

Xl-PSID

Average intensity

Rank

DF HGNCs

Xl.10055.1.S1_at

14.94

1

CLU

Xl.2292.1.S1_at

14.29

1

PMP22

Xl.21377.1.S1_a_at

14.81

2

RPS4X

Xl.24754.1.S1_a_at

14.16

2

RPS19

Xl.23752.1.S1_x_at

14.68

3

RPS3A

Xl.8924.1.A1_at

13.04

3

GJB2

Xl.212.2.S1_a_at

14.34

4

FRZB

Xl.8851.1.S1_at

12.83

4

ITM2B

Xl.2292.1.S1_at

14.29

5

PMP22

Xl.20900.1.S1_at

12.44

5

CD151

Xl.8860.1.S1_at

14.08

6

TPT1

Xl.4138.2.S1_x_at

12.42

6

ACTB

Xl.509.1.S1_at

14.06

7

ATP1B2

Xl.606.1.S1_s_at

12.31

7

COL2A1

Xl.2617.1.S1_at

13.87

8

RPSA

Xl.26213.1.S1_at

12.13

8

COL1A1

Xl.4905.1.S1_at

13.8

9

GSTM4

Xl.2652.1.S1_at

11.77

9

PLOD3

Xl.21686.1.S1_at

13.74

10

ATP1A1

Xl.1023.1.S2_at

11.36

10

POU3F4

6 C. IC/Xl-PSID

6D. IT/Xl-PSID

Xl-PSID

Average Intensity

Rank

IC HGNCs

Xl-PSID

Average intensity

Rank

IT HGNCs

Xl.24385.1.S1_at

12.51

1

VDAC2

Xl.3792.1.S1_x_at

14.31

1

ATP1A1

Xl.23903.1.S1_at

12.32

2

FXYD3

Xl.509.1.S1_at

14.06

2

ATP1B2

Xl.1198.1.S1_at

10.85

3

GRID1

Xl.3792.1.S1_s_at

13.26

3

ATP1A1

Xl.9482.1.A1_at

10.44

4

ABP1

Xl.8924.1.A1_at

13.04

4

GJB2

Xl.11705.1.S1_at

10.42

5

SLC25A12

Xl.6045.1.S1_at

12.54

5

ATP1B3

Xl.21929.1.S1_at

9.70

6

KCNK1

Xl.24385.1.S1_at

12.51

6

VDAC2

Xl.21035.1.S1_at

9.69

7

SCNN1B

Xl.23903.1.S1_at

12.32

7

FXYD3

Xl.6273.1.S1_at

9.68

8

VDAC1

Xl.18325.1.A1_at

12.24

8

 

Xl.1407.1.S1_at

9.55

9

KCNAB2

Xl.8573.2.S1_a_at

11.67

9

ATP6V0C

Xl.17482.1.S1_at

9.53

10

GRINA

Xl.8573.2.S1_x_at

11.67

10

ATP6V0C

6E. pTF/Xl-PSID

 

Xl-PSID

Average intensity

Rank

gene symbol

Xl.25811.2.S1_a_at

13.55

1

atf4

Xl.25811.1.S1_x_at

13.36

2

atf4

Xl.3536.1.S1_x_at

12.59

3

btf3

Xl.3536.2.S1_x_at

12.27

4

btf3

Xl.3536.2.S1_a_at

12.23

5

btf3

Xl.1023.1.S2_at

11.36

6

pou3f4

Xl.3360.1.S1_a_at

10.96

7

ilf2

Xl.12057.2.A1_a_at

10.78

8

srebf1

Xl.4461.1.A1_at

10.76

9

ldb1

Xl.683.1.S1_at

10.7

10

six1

  1. The Xl-PSIDs with the 10 highest intensity values are listed for each inner ear gene category. The corresponding HGNC symbols or gene symbols are listed for all categories. In (D), two pairs of Xl-PSIDs correspond to the same HGNC symbol and have probes derived from the same consensus sequence. One Xl-PSID in (D) did not have a HGNC symbol due to the lack of sequence similarity to a human orthologue.