Estimation of linkage disequilibrium in four US pig breeds

BMC Genomics

Table 3 Pairwise breed comparison of correlation of phase and proportion of phase agreement at various distances

Breeds Compared	Distance¹	Proportion of r with opposite sign²	Correlation of r_ij(k)and r_ij(k')³
	0-10 kb	0.107	0.875
	10-50 kb	0.184	0.762
Duroc - Hampshire	50-100 kb	0.246	0.668
	0.9-1 Mb	0.391	0.408
	4.9-5 Mb	0.469	0.210
	0-10 kb	0.108	0.872
	10-50 kb	0.186	0.773
Duroc - Landrace	50-100 kb	0.251	0.681
	0.9-1 Mb	0.395	0.438
	4.9-5 Mb	0.485	0.190
	0-10 kb	0.104	0.870
	10-50 kb	0.195	0.761
Duroc - Yorkshire	50-100 kb	0.252	0.670
	0.9-1 Mb	0.396	0.422
	4.9-5 Mb	0.468	0.201
	0-10 kb	0.099	0.882
	10-50 kb	0.184	0.776
Hampshire - Landrace	50-100 kb	0.242	0.697
	0.9-1 Mb	0.392	0.441
	4.9-5 Mb	0.475	0.189
	0-10 kb	0.113	0.871
	10-50 kb	0.189	0.771
Hampshire - Yorkshire	50-100 kb	0.249	0.686
	0.9-1 Mb	0.389	0.439
	4.9-5 Mb	0.459	0.245
	0-10 kb	0.087	0.921
	10-50 kb	0.160	0.842
Landrace - Yorkshire	50-100 kb	0.204	0.783
	0.9-1 Mb	0.353	0.571
	4.9-5 Mb	0.448	0.297

ISSN: 1471-2164