The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L.

BMC Genomics

Table 1 Sequence information and related accessions

GENE	cTP¹	cDNA (bp)²	gDNA (bp)³	DFCI TIGR Accession⁴	Unigene Accession⁵	Associated Linkage Group (LG)⁶
GENE	cTP¹	cDNA (bp)²	gDNA (bp)³	DFCI TIGR Accession⁴	Unigene Accession⁵	IASMA⁷	Genoscope⁸
VvPSY1	YES	1317	3837	TC43355	Vvi.4169	LG4	LG4
VvPDS1	YES	1749	26291	CN007512	Vvi.17887	ND⁹	LG9
VvZDS1	YES	1752	12807	TC4818	Vvi.6755	LG14	LG14
VvLECY1	YES	1593	6670	TC49056	Vvi.11880	LG11	LG11
VvLUT1	YES	1692	5244	EC943050	None¹⁰	LG8	LG8
VvLBCY2	YES	1515	1515	TC50860	Vvi.2624	LG8	LG8
VvLBCY1	YES	1494	1494	EC925449	Vvi.18979	LG6	LG6
VvBCH1	YES	900	1660	TC42069	Vvi.2348	LG2	LG2
VvZEP1	YES	1977	7524	TC46508	Vvi.1307	LG7	LG7
VvVDE1	YES	1440	4971	TC47195	Vvi.1247	LG4	LG4
VvNCED3	YES	1833	1833	TC48377	Vvi.509	LG19	LG19

¹ cTP: Softberry ProtComp (http://www.softberry.com/berry.phtml) prediction for a chloroplast transit peptide.
² The size in base pairs of the cDNA copy of the gene from the predicted ATG to the predicted STOP codon;
³ The size in base pairs of the genomic copy of the gene from the predicted ATG to the predicted STOP codon;
⁴ The DFCI TIGR (http://www.tigr.org) accession number(s) of tentative consensus sequence corresponding to the isolated gene;
⁵ The Unigene (http://www.ncbi.nlm.nih.gov/unigene) accession numbers(s) corresponding to the isolated gene;
⁶ The grapevine linkage group (LG) associated with the isolated gene;
⁷ The heterozygous ENTAV115 Pinot noir genome sequence from IASMA (http://genomics.research.iasma.it/iasma/);
⁸ The homozygous PN40024 Pinot noir genome sequence from Genoscope (http://www.cns.fr/spip/Vitis-vinifera-whole-genome.html);
⁹ ND: Not determined; could not be mapped to the ENTAV115 genomic sequence.
¹⁰ None: No associated Vitis Unigene(s) (http://www.ncbi.nlm.nih.gov/UniGene/UGOrg.cgi?TAXID=29760).

ISSN: 1471-2164