|  |  |  | Naive reference | Cured reference |  | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample | Experiment | Type | No. sequence reads | No. sequence reads mapped to reference | Aligned reference sequence /bases | Average depth over aligned reference | No. unigenes with mapped sequence reads | Total sequence mapped to naive reference/Gb | No. sequence reads mapped to A genome | No. A genome unigenes with mapped sequence reads | No. sequence reads mapped to C genome | No. C genome unigenes with mapped sequence reads | Aligned reference sequence /bases | Average depth over aligned reference | Total sequence mapped to cured reference/ Gb | Increase sequence mapped to reference / % |
B. napus 1 rep1 | BCC_1_2* | Resynthesized (B. rapa cytoplasm) | 30290727 | 11396746 | 27704492 | 32.9 | 60801 | 0.91 | 8136121 | 57101 | 7725545 | 57232 | 48716080 | 26.0 | 1.27 | 39.2 |
B. napus 1 rep2 | BCC_2_2_rep* | Â | 32362747 | 12596459 | 27628537 | 36.4 | 60182 | 1.01 | 8974130 | 56758 | 8472600 | 56859 | 48927782 | 28.5 | 1.40 | 38.5 |
B. napus 1 rep3 | BCC_3_2* | Â | 30212318 | 12688970 | 28367947 | 35.8 | 60953 | 1.02 | 8933134 | 57381 | 8523534 | 57505 | 50115239 | 27.9 | 1.40 | 37.6 |
B. napus 1 rep4 | BCC_4_2* | Â | 29073842 | 12556527 | 27816387 | 36.1 | 60572 | 1.00 | 8886730 | 57072 | 8581997 | 57168 | 49020495 | 28.5 | 1.40 | 39.1 |
B. napus 2 rep1 | BCC_1_4* | Resynthesized (B. oleracea cytoplasm) | 28333122 | 11390102 | 28050282 | 32.5 | 61139 | 0.91 | 8138583 | 57406 | 7545728 | 57600 | 49388101 | 25.4 | 1.25 | 37.7 |
B. napus 2 rep2 | BCC_2_4* | Â | 27156815 | 11209306 | 27415043 | 32.7 | 59994 | 0.90 | 7908682 | 56465 | 7619986 | 56551 | 48167524 | 25.8 | 1.24 | 38.5 |
B. napus 2 rep3 | BCC_3_4* | Â | 29720775 | 12618159 | 28214425 | 35.8 | 61051 | 1.01 | 8828851 | 57410 | 8491265 | 57632 | 49691719 | 27.9 | 1.39 | 37.3 |
B. napus 2 rep4 | BCC_4_4* | Â | 29830870 | 12580532 | 28294428 | 35.6 | 61303 | 1.01 | 8829979 | 57645 | 8473127 | 57779 | 49861276 | 27.8 | 1.38 | 37.5 |
Tapidor | TAP** | Winter | 22841910 | 11026783 | 28473370 | 31.0 | 61776 | 0.88 | 6770387 | 57940 | 7281348 | 58231 | 48844912 | 23.0 | 1.12 | 27.4 |
Ningyou 7 | NIN** | Chinese | 23151184 | 10774087 | 28233727 | 30.5 | 61982 | 0.86 | 6640976 | 58055 | 6841509 | 58167 | 48266879 | 22.3 | 1.08 | 25.1 |
Altasweet | D3_ALT* | Swede | 29080184 | 13239756 | 28730927 | 36.9 | 61251 | 1.06 | 8340513 | 58022 | 8806044 | 58177 | 49777567 | 27.6 | 1.37 | 29.5 |
Ceska | D31_CES* | Spring | 28036702 | 13193597 | 29567877 | 35.7 | 61903 | 1.06 | 8050594 | 58512 | 8803320 | 58830 | 51209098 | 26.3 | 1.35 | 27.7 |
Aphid Resistant Rape | D8_AphRR* | Fodder | 28334337 | 11879400 | 29161922 | 32.6 | 62434 | 0.95 | 7486610 | 58922 | 7881247 | 59083 | 50269176 | 24.5 | 1.23 | 29.4 |