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Table 4 Promoters found upstream of sporulation gene homologs in the Epulopiscium genome

From: The genomic basis for the evolution of a novel form of cellular reproduction in the bacterium Epulopiscium

GENE/OPERON

PROMOTER

 

σF

σE

σG

σK

 

−35

−10

−35

−10

−35

−10

−35

−10

sigG

GTATA

GGGTATCCTA

  

GTATA

TATCCTA

  

spoIVB

GTATA

GGCAATTTTA

  

GTATA

AATTTTA

  

spoIID

  

TTATAAGT

TCATATAATT

    

spoIIIA

  

TAATGATT

GCATATACTG

    

spoIIID

  

TAATATAT

GCATATTATT

    

spoIVA

  

TCATATCC

ACATATAGTT

    

yabPQ

  

GAATAATT

AAATATAAAT

    

yqfCD

  

GAATACTT

GCATAATATG

    

dacF

    

GTATA

AATAATA

  

cwlD

    

GAATT

GATAATA

  

gpr-spoIIP

    

GATTA

TATATTA

  

spoVT

    

GCATA

CATAATA

  

spoVFB

      

TCACA

TCATATTATA

B. subtilis consensusa

G TATA

G GNAA NA MT R

TYAT ATTT

KCATA NANT N

GNAT A

CA WA MTA

KCAC M

GCATA NNNT A

  1. a Consensus sequences from B. subtilis were based on Wang et al. (2006) and Eichenberger et al. (2004). Bold indicates a highly conserved base. N = A, T, G, C; R = A, G; Y = C, T; K = T, G; M = A, C; W = A, T.
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BMC Genomics

ISSN: 1471-2164

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