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Table 1 The WRKY transcription factor family in Brachypodium

From: The WRKY transcription factor family in Brachypodium distachyon

Gene name

Location

Gene model

Comments

BdWRKY1

Bd2:14220256.14222873

Bradi2g16150.1

Group IIb

BdWRKY2

Bd2:3983627.3984262

Bradi2g05510.1

Group IIc

BdWRKY3

Bd2:58924622.58926999

Bradi2g62130.1

Group IIc. Gene model incorrect.

BdWRKY4

Bd2:9403194.9408009

Bradi2g11170.1

Group IIb

BdWRKY5

Bd2:6965062.6969356

Bradi2g08620.1

Group IIb

BdWRKY6

Bd3:17079694.17080883

Bradi3g18580.1

Group IId

BdWRKY7

Bd4:1276705.1278741

Bradi4g01950.1

Group I

BdWRKY8

Bd2:52655598.52657803

Bradi2g53510.1

Group III

BdWRKY9

Bd2:52646076.52649410

Bradi2g53500.1

Group III

BdWRKY10

Bd4:47804750.47805919

Bradi4g44370.1

Group III

BdWRKY11

Bd2:30385271.30389483

Bradi2g30790.1

Group III

BdWRKY12

Bd3:57392174.57394564

Bradi3g57710.1

Group IIb

BdWRKY13

Bd3:36924901.36926175

Bradi3g34570.1

Group IIe, Gene Model incorrect.

BdWRKY14

Bd4:36119270.36124180

Bradi4g30370.1

Group IIa. Prediction using 40kb sequence for

  

Bradi4g30360.1

Bradi4g30360 and Bradi4g30370 together.

BdWRKY15

Bd4:47786980.47788750

Bradi4g44350.1

Group III

BdWRKY16

Bd2:46341174.46344106

Bradi2g45900.1

Group IIc

BdWRKY17

Bd2:30398035.30400975

Bradi2g30800.1

Group III

BdWRKY18

Bd1:1580683.1586394

Bradi1g02340.1

Group I. Second domain is truncated.

   

Possible pseudogene.

BdWRKY19

Bd4:33637416.33639506

Bradi4g28280.1

Group III

BdWRKY20

Bd1:62421625.62422845

Bradi1g63220.1

Group III

BdWRKY21

Bd3:8007304.8009052

Bradi3g09810.1

Group IIe

BdWRKY22

Bd1:47430434.47433797

Bradi1g48770.1

Group III

BdWRKY23

Bd1:5717967.5719246

Bradi1g08100.1

Group IIc. Gene model incorrect.

BdWRKY24

Bd2:49173622.49177995

Bradi2g49020.1

Group IIc

BdWRKY25

Bd2: 52664751 - 52666466

Bradi2g53520.1

Group III

BdWRKY26

Bd4:21655844.21659743

Bradi4g19060.1

Group IIc

BdWRKY27

Bd1:5619653.5623406

Bradi1g07970.1

Group I

BdWRKY28

Bd1:14207355.14209349

Bradi1g17660.1

Group III

BdWRKY29

Bd4:47797837.47799556

Bradi4g44360.1

Group III

BdWRKY30

Bd2:13707176.13708809

Bradi2g15360.1

Group IIc

BdWRKY31

Bd1:11188915.11191904

Bradi1g14300.1

Group IId

BdWRKY32

Bd5:16639846.16643118

Bradi5g13090.1

Group I

BdWRKY33

Bd5:20666685.20686684

-

Group IIc. No Gene Model

BdWRKY34

Bd5:6201425.6206424

Bradi5g04820.1

Group IId Gene Model Incorrect.

BdWRKY35

Bd5:23482100.23483388

Bradi5g20700.1

Group II d

BdWRKY36

Bd5:23193818.23196993

Bradi5g20290.1

Group IIe

BdWRKY37

Bd3:41662537.41665191

Bradi3g39340.1

Group I

BdWRKY38

Bd3:18514515.18520937

Bradi3g19640.1

Group I

BdWRKY39

Bd3:4354442.4356174

Bradi3g06070.1

Group IIa

BdWRKY40

Bd3:37214494.37216071

Bradi3g34850.1

Group III

BdWRKY41

Bd3:51584113.51587575

Bradi3g50360.1

Group IIc

BdWRKY42

Bd3:53316886.53321459

Bradi3g52420.1

Group IIe

BdWRKY43

Bd4:31071952.31076951

Bradi4g25720.1

Group III, Gene Model Incorrect.

BdWRKY44

Bd2:19779563.19782548

Bradi2g22230.1

Group III

BdWRKY45

Bd2:52860060.52862718

Bradi2g53760.1

Group I

BdWRKY46

Bd2:19960366.19962573

Bradi2g22440.1

Group I

BdWRKY47

Bd2:37371.39452

Bradi2g00280.1

Group I

BdWRKY48

Bd2:3979821.3981719

Bradi2g05500.1

Group IIb

BdWRKY49

Bd2:3815724.3825723

-

Group IIc. No Gene Model

BdWRKY50

Bd2:33674703.33675549

Bradi2g33540.1

Group IIc

BdWRKY51

Bd2:14038105.14040104

Bradi2g15880.1

Group III. Gene Model short.

BdWRKY52

Bd2:42525077.42527076

-

Group IIc. No gene Model.

BdWRKY53

Bd2:44578672.44580858

Bradi2g44090.1

Group IIc

BdWRKY54

Bd2:16801079.16803652

Bradi2g19070.1

Group IIc

BdWRKY55

Bd2:45857664.45858974

Bradi2g45480.1

Group III

BdWRKY56

Bd2:16474142.16475652

Bradi2g18530.1

Group IIc

BdWRKY57

Bd2:53553539.53556063

Bradi2g54720.1

Group IIc, Gene Model Incorrect.

BdWRKY58

Bd2:48426948.48428121

Bradi2g48090.1

Group IIc

BdWRKY59

Bd4:48418469.4842114

Bradi4g45290.1

Group I. Gene Model Short.

BdWRKY60

Bd4:39074575.39078767

Bradi4g33370.1

Group IIc

BdWRKY61

Bd4:5576052.5581378

Bradi4g06690.1

Group I

BdWRKY62

Bd4:9350003.9357060

Bradi4g09890.1

Group I

BdWRKY63

Bd4:1992609.1995531

Bradi4g02680.1

Group IId

BdWRKY64

Bd1:18715369.18721632

Bradi1g23340.1

Group I

BdWRKY65

Bd1:46394072.46396455

Bradi1g47690.1

One and a half WRKY domains followed by

   

a FAR1-s domain and a MULE transposon.

BdWRKY66

Bd1:13042696.13049431

Bradi1g16120.1

Group I

BdWRKY67

Bd1:18197079.18200281

Bradi1g22680.1

Group I

BdWRKY68

Bd1:26329079.26330580

Bradi1g30870.1

Group IIa

BdWRKY69

Bd1:36017779.36022778

-

Group IIe. No Gene Model

BdWRKY70

Bd1:49453669.49457672

Bradi1g51030.1

Group IIb

BdWRKY71

Bd1:58314278.58317315

Bradi1g59180.1

Group IIc

BdWRKY72

Bd1:10018159.10019283

Bradi1g13210.1

Group IIc. WKKY group

BdWRKY73

Bd1:724757.729756

Bradi1g01060.1

Group IIe. No Gene Model.

BdWRKY74

Bd1:6545010.6548310

Bradi1g09170.1

Group IId

BdWRKY75

Bd1:70813782.70818781

-

Retrotransposon with N-terminal part of WRKY domain.

BdWRKY76

Bd2:14428190.14433051

Bradi2g16360.1

Group IIc. Gene Model Incorrect

BdWRKY77

Bd2:49902436.49907435

-

Group IIe. No Gene Model.

BdWRKY78

Bd1:63118295.63119746

Bradi1g63910.1

Group III

BdWRKY79

Bd2:44782012.44783510

Bradi2g44270.1

Group III

BdWRKY80

Bd2:49068600.49073599

Bradi2g48910.1

Group IIe

BdWRKY81

Bd2:13725107.13735106

-

Group IIe. No Gene model.

BdWRKY82

Bd2:44526356.44531355

-

Group IIe. No Gene Model.

BdWRKY83

Bd2:19783798.19788797

Bradi2g22240.1

Group III. Gene Model Incorrect.

BdWRKY84

Bd2:52617265.52627264

Bradi2g53480.1

Group III. Gene Model Incorrect

BdWRKY85

Bd2: 52628591 - 52629373

Bradi2g53490

Group III. Gene Model Incorrect.

BdWRKY86

Bd4:47782844.47784664

-

Group III.No Gene Model

  1. For each WRKY transcription factor, the chromosomal location and gene model (if present) are shown, together with any comments concerning the gene.
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BMC Genomics

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