Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species

BMC Genomics

Table 4 The top 40 Pfam domains and families in D. japonica unigenes

Pfam_ID	Conserved Domain	Genes
pfam00069	Protein kinase domain	307
pfam12796	Ankyrin repeats	101
pfam00076	RNA recognition motif	71
pfam00071	Ras family	62
pfam07690	Major Facilitator Superfamily	49
pfam07714	Protein tyrosine kinase	38
pfam00876	Innexin	34
pfam00443	Ubiquitin carboxyl-terminal hydrolase	33
pfam00067	Cytochrome P450	32
pfam00270	DEAD/DEAH box helicase	29
pfam00102	Protein-tyrosine phosphatase	28
pfam00001	7 transmembrane receptor (rhodopsin family)	27
pfam00022	Actin	27
pfam00112	Papain family cysteine protease	27
pfam00350	Dynamin family	26
pfam00240	Ubiquitin family	23
pfam00335	Tetraspanin family	23
pfam11901	Protein of unknown function (DUF3421)	23
pfam03028	Dynein heavy chain and region D6 of dynein motor	22
pfam00226	DnaJ domain	21
pfam00271	Helicase conserved C-terminal domain	21
pfam00012	Hsp70 protein	20
pfam02931	Neurotransmitter-gated ion-channel ligand binding domain	20
pfam00153	Mitochondrial carrier protein	19
pfam00179	Ubiquitin-conjugating enzyme	19
pfam00620	RhoGAP domain	19
pfam01576	Myosin tail	19
pfam03953	Tubulin C-terminal domain	19
pfam00004	ATPase family associated with various cellular activities	16
pfam00017	SH2 domain	16
pfam00060	Ligand-gated ion channel	16
pfam00089	Trypsin	16
pfam00155	Aminotransferase class I and II	16
pfam00168	C2 domain	16
pfam01145	SPFH domain/Band 7 family	16
pfam00046	Homeobox domain	15
pfam00091	Tubulin/FtsZ family, GTPase domain	15
pfam00307	Calponin homology (CH) domain	15
pfam00501	AMP-binding enzyme	15
pfam00782	Dual specificity phosphatase, catalytic domain	15

ISSN: 1471-2164