Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species

Nishimura, Osamu; Hirao, Yukako; Tarui, Hiroshi; Agata, Kiyokazu

doi:10.1186/1471-2164-13-289

BMC Genomics

Table 5 Comparative analysis of D. japonica CNS development genes with S. mediterranea and the schistosoma

From: Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species

GO Term	D. japonica Unigenes	UniProt KB Homology	UniProt E-value	S. mediterranea		Schistosoma
				Genome	mRNA	Genome	mRNA
ventral cord development	Dj_CL2868_001_b2	Protein numb	2.00E-68	+	+	+	+
	Dj_CL0775_001_b2	Ras-related protein Rac1	2.00E-85	+	+	+	+
	Dj_aH_314_P04.full	Protein nubbin	7.00E-21	+	+	+
	Dj_aH_000_00626HN.full	Zinc finger protein jing	1.00E-12	+	+	+
brain development	Dj_CL0266_002_b2	Dynein heavy chain, cytoplasmic	0.00E + 00	+	+	+	+
	Dj_aH_323_P16	DNA topoisomerase 2-beta	1.00E-129	+	+	+	+
	Dj_CL2992_001_b2	Probable global transcription activator SNF2L1	1.00E-104	+	+	+	+
	Dj_CL0800_001_b2	Transcriptional regulator ATRX	5.00E-84	+	+	+	+
	Dj_aH_133136_J24	Myosin-10	2.00E-80	+	+	+	+
	Dj_CL1927_001_b2	Protein Wnt-4	3.00E-62	+	+	+	+
	Dj_CL1142_001_b2	Brain tumor protein	5.00E-35	+	+	+	+
	Dj_CL2438_001_b2	Ubiquitin carboxyl-terminal hydrolase isozyme L5	3.00E-72	+	+	+	+
	Dj_CL1575_001_b2	Alpha-soluble NSF attachment protein	1.00E-77	+	+	+	+
	Dj_aH_121124_O06	cGMP-dependent protein kinase 1	4.00E-81	+	+	+	+
	Dj_aH_203_F09	Neurofibromin	2.00E-40	+	+	+	+
	Dj_aH_517_H15.double	Receptor tyrosine-protein kinase erbB-4	3.00E-83	+	+	+	+
	Dj_aH_526_D23.double	Hypoxanthine-guanine phosphoribosyltransferase	4.00E-61	+	+	+	+
	Dj_aH_214_D06.full	Homeobox protein SIX3	2.00E-90	+	+	+	+
	Dj_aH_202_C21	Plasma membrane calcium-transporting ATPase 3	8.00E-47	+	+	+	+
	Dj_CL0788_001_b2	Neural cell adhesion molecule 1	5.00E-18	+	+	+	+
	Dj_aH_204_E12	Protein kinase C iota type	1.00E-49	+	+	+	+
	Dj_CL3335_001_b2	Nuclear factor 1 B-type	4.00E-14	+	+	+	+
	Dj_aH_307_L04.rev	cGMP-dependent protein kinase 1	8.00E-55	+	+	+	+
	Dj_CL3457_001_b2	RNA binding protein fox-1 homolog 1	5.00E-33	+	+	+	+
	Dj_CL1765_001_b2	Zinc finger protein ZIC 2	2.00E-73	+	+	+	+
	Dj_aH_503_H01	Epidermal growth factor receptor	9.00E-38	+	+	+	+
	Dj_aH_511_L17	Tubby-related protein 3	2.00E-44	+	+	+	+
	Dj_CL1678_001_b2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	2.00E-35	+	+	+	+
	Dj_CL2162_001_b2	Menin	1.00E-37	+	+	+	+
	Dj_CL3785_001_b2	Excitatory amino acid transporter 2	5.00E-28	+	+	+	+
	Dj_aH_514_N16	DNA topoisomerase 2-beta	2.00E-33	+	+	+	+
	Dj_aH_325_L12.double	Paired mesoderm homeobox protein 2B	2.00E-28	+	+	+	+
	Dj_aH_305_P01	Transcriptional regulator ATRX	9.00E-29	+	+	+	+
	Dj_aH_520_E14	Epidermal growth factor receptor	9.00E-15	+	+	+	+
	Dj_aH_000_01325HH.double	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	1.00E-24	+	+	+	+
	Dj_aH_217_D18	Cysteine string protein	7.00E-28	+	+	+	+
	Dj_aH_402_H01	LIM homeobox transcription factor 1-alpha	2.00E-29	+	+	+	+
	Dj_CL3423_001_b2	Lethal(2) giant larvae protein homolog 1	2.00E-14	+	+	+	+
	Dj_aH_222_K23	Leishmanolysin-like peptidase	2.00E-38	+	+	+	+
	Dj_aH_505_J10	Ski oncogene	1.00E-32	+	+	+	+
	Dj_aH_519_D15.double	Bardet-Biedl syndrome 2 protein homolog	4.00E-51	+	+	+	+
	Dj_CL0001_086_b2	Paired box protein Pax-6	5.00E-72	+	+	+	+
	Dj_CL3673_001_b2	Glutamate [NMDA] receptor subunit epsilon-1	2.00E-37	+	+	+	+
	Dj_aH_000_04532HH.full	Protocadherin-18	3.00E-39	+		+	+
	Dj_aH_523_G03.rev	Tubby-related protein 3	4.00E-23	+	+	+	+
	Dj_CL1956_001_b2	Homeobox protein meis3-A	3.00E-44	+	+	+	+
	Dj_CL1514_001_b2	Protocadherin-like wing polarity protein stan	2.00E-20	+	+	+	+
	Dj_CL2141_001_b2	Large proline-rich protein BAG6	2.00E-11	+	+	+	+
	Dj_aH_306_A21	Sphingosine kinase 2	3.00E-14	+	+	+
	Dj_CL3244_001_b2	Neuroligin-4, X-linked	1.00E-21	+	+	+
	Dj_CL4115_001_b2	Neuroglian	2.00E-41	+	+	+
	Dj_aH_306_H01	Protein phosphatase Slingshot	6.00E-14	+	+	+
	Dj_CL1452_001_b2	SH3 and multiple ankyrin repeat domains protein 2	3.00E-18	+	+	+
	Dj_CL1757_001_b2	Intraflagellar transport protein 88 homolog	4.00E-74	+	+	+
	Dj_aH_527_L21	Cytosolic carboxypeptidase 1	3.00E-76	+	+	+
	Dj_aH_522_B06	Slit homolog 2 protein (Fragment)	7.00E-15	+	+	+
	Dj_aH_137140_C22	Bardet-Biedl syndrome 4 protein	6.00E-47	+	+	+
	Dj_aH_303_K17	Zinc finger protein Dzip1	1.00E-33	+	+	+
	Dj_aH_207_O05	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2	8.00E-88	+	+	+
	Dj_CL0854_001_b2	Secreted frizzled-related protein 5	3.00E-29	+	+	+
	Dj_CL3133_001_b2	Cytosolic carboxypeptidase 1	3.00E-35	+	+	+
	Dj_aH_313_M09.double	Cyclin-dependent kinase 5 activator 1	2.00E-48	+	+	+
	Dj_CL0876_001_b2	Sodium/calcium exchanger 1	1.00E-161	+	+	+
	Dj_aH_303_F09	Frizzled-8	1.00E-21	+	+	+
	Dj_CL4143_001_b2	Intraflagellar transport protein 88 homolog	2.00E-81	+	+	+
	Dj_aH_530_O19	Paired box protein Pax-6	9.00E-55	+	+	+
	Dj_aH_007_F21	Protein Hook homolog 3	6.00E-13	+	+
	Dj_aH_309_N15.double	Dixin	6.00E-11	+	+
Dj_CL4393_001_b2	Endothelin-converting enzyme 2	7.00E-34	+	+
Dj_aH_325_L06	Centrosomal protein of 290 kDa	3.00E-31	+	+
Dj_CL0234_001_b2	Reticulon-4	2.00E-13	+	+
Dj_aH_518_F04.double	Ceroid-lipofuscinosis neuronal protein 5	2.00E-74	+	+
spinal cord development	Dj_aH_203_F09	Neurofibromin	2.00E-40	+	+	+	+
	Dj_aH_000_02581HH	Calpain-A	1.00E-51	+	+	+	+
	Dj_aH_502_D11	Calpain-A	2.00E-67	+	+	+	+
	Dj_aH_511_L17	Tubby-related protein 3	2.00E-44	+	+	+	+
	Dj_CL3713_001_b2	Suppressor of fused homolog	2.00E-21	+	+	+	+
	Dj_aH_000_01210HH.full	Suppressor of fused homolog	3.00E-15	+	+	+	+
	Dj_CL3673_001_b2	Glutamate [NMDA] receptor subunit epsilon-1	2.00E-37	+	+	+	+
	Dj_aH_523_G03.rev	Tubby-related protein 3	4.00E-23	+	+	+	+
	Dj_aH_522_B06	Slit homolog 2 protein (Fragment)	7.00E-15	+	+	+
	Dj_aH_000_03614HH	DNA-binding protein SMUBP-2	4.00E-23	+	+
central nervous system neuron differentiation	Dj_CL2485_001_b2	Spastin	1.00E-83	+	+	+	+
	Dj_aH_526_D23.double	Hypoxanthine-guanine phosphoribosyltransferase	4.00E-61	+	+	+	+
	Dj_aH_511_L17	Tubby-related protein 3	2.00E-44	+	+	+	+
	Dj_aH_402_H01	LIM homeobox transcription factor 1-alpha	2.00E-29	+	+	+	+
	Dj_aH_523_G03.rev	Tubby-related protein 3	4.00E-23	+	+	+	+
	Dj_aH_527_L21	Cytosolic carboxypeptidase 1	3.00E-76	+	+	+
	Dj_CL3133_001_b2	Cytosolic carboxypeptidase 1	3.00E-35	+	+	+
	Dj_aH_000_03614HH	DNA-binding protein SMUBP-2	4.00E-23	+	+
astrocyte differentiation	Dj_aH_203_F09	Neurofibromin	2.00E-40	+	+	+	+
	Dj_CL0341_002_b2	Porphobilinogen deaminase	4.00E-69	+	+	+	+
	Dj_CL0341_001_b2	Porphobilinogen deaminase	2.00E-64	+	+	+	+
oligodendrocyte differentiation	Dj_aH_203_F09	Neurofibromin	2.00E-40	+	+	+	+
	Dj_aH_513_H15.rev	Exocyst complex component 4	7.00E-18	+	+	+	+
	Dj_CL1495_001_b2	Translation initiation factor eIF-2B subunit delta	4.00E-42	+	+	+	+

+ indicate the presence of gene which homologous with D. japonica CNS-development gene in S. mediterranea and the schistosoma.

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