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Table 3 Electronic Northern of high confidence new miRNAs (class I) expression profiles in different libraries

From: Computational identification and analysis of novel sugarcane microRNAs

ID

miRNA

miRNA*

Eletronic Northern

Biotic stress

Drought stress

Salt stress

CT

AA

T 0h

T 24h

S 0h

S 24h

0h

1h

6h

24h

sof-miR-Seq07

AAAACGTCTTATAATTTGGAG

CAAATTATAAGATGTTTTGGC

18.06

23.17

-

-

-

-

-

-

-

-

sof-miR-Seq15

AAAATTATCGTAAATAGAGGTGGC

TAGCCACTTTGAGTTACGATAATT

-

8.77

2.78

6.89

4.02

7.60

-

-

-

-

sof-miR-Seq42

AAAGTTGTGTATCTAGAAAAG

TGGCTTTTCTAGATACATAGC

67.25

37.58

-

-

-

-

2.08

-

-

-

sof-miR-Seq143

AATTCGTCGAACAGCTGCAGC

ACGCGAGCTGTTTGGCGAATT

295.17

1436.67

-

-

-

-

-

-

-

-

sof-miR-Seq151

ACAAGTTTCGTGATTTTTGGA

CGAAAATCACGAAACTTGTCG

23.04

12.53

-

-

-

-

-

-

1.24

1.12

sof-miR-Seq155

ACACATGTGGATTGAGATGAATAC

TTCACATCAATCCACATATGTTGG

15.57

27.56

-

-

-

-

-

-

-

-

sof-miR-Seq171

ACTATGTATCTAGAAAAGCTA

TTTCTAGGTACATAGCTTTTG

-

-

2.47

1.80

1.72

-

-

-

-

0.80

sof-miR-Seq183

ACTTACAGTTTGGAACGGAGG

TCTGTTCCAAATTGTAAGTCG

-

5.64

-

-

-

-

-

-

-

-

sof-miR-Seq253

AGTCCCGAAACCTTAGTCCCGGCT

GAACCGGGACTAAAGGTGGGACAT

21.80

6.26

-

-

-

-

-

6.22

-

5.93

sof-miR-Seq313

ATGCCTTATAATTTGGGATGGAGA

CTCCATCCTAAATTATAAGACATT

-

-

-

-

-

-

-

-

0.77

-

sof-miR-Seq345

ATTTGACTGACACGGATTCTAGGA

TAGAGTTGTCCTAAGTCAAACTTT

3.74

-

-

-

-

-

-

-

-

-

sof-miR-Seq375

CCGGGGCCAGATCTCAGAAGC

TTCTGACTTCTGGCCCCTGCT

-

-

-

-

-

-

-

-

-

2.24

sof-miR-Seq376

CCTGTTTGGATCAGCCAAGGC

CTAGCTGATCCAAACAGGCCC

13.08

9.39

-

-

-

-

-

-

-

-

sof-miR-Seq393

CTAGCATGTTCCTCCTAAGAG

TTCTTGGGAGGAGCATGCTAG

-

5.01

-

-

-

-

-

-

-

-

sof-miR-Seq394

CTCCGTCCTAATATATAAGGC

CTTATATACTAGGACGGAGGG

4.36

-

-

-

-

-

-

-

-

-

sof-miR-Seq409

GAAACGAATCTTTTAAGTCTAATT

AACTAGACTCAAAAGATTCATCTC

3.11

-

-

-

-

-

-

-

-

-

sof-miR-Seq468

GATTAGTCACGATTAGTCGTCCGA

AGATCGGACGACTAATCGCGATTA

-

-

-

-

-

-

-

-

0.77

-

sof-miR-Seq488

GCGTGCAAGGAGCCAAGCATG

TGCCTGGCTCCCTGTATGCCA

-

-

572.49

482.28

497.41

570.24

-

-

-

-

sof-miR-Seq501

GGCATGGGAACATGTAGGAAGG

TTCCTGATGCCTCCCATGCCTA

11.21

-

-

-

-

-

-

-

-

-

sof-miR-Seq504

GGGAGCAATTCGTCGAACAGC

AGCTGTTCGACGAATGCCTCC

123.30

-

-

-

-

-

-

-

-

-

sof-miR-Seq509

GGGCCCAAATAGCAAGTGTTGTGA

CTCACAACACTTGCTATTTGGG

-

-

-

-

-

-

1.48

-

2.01

0.96

sof-miR-Seq511

GGGCGGTCACCTTGGCTAGC

TAGCCAAGGATGACTTGCCT

132.64

-

-

-

-

-

-

-

26.48

-

sof-miR-Seq513

GGGGGCGGACTGGGAACACAT

TGTGTTCTCAGGTCGCCCCCG

-

-

-

-

-

-

-

3404.36

-

-

sof-miR-Seq536

GTGCGGTTCTCCTCTGGCATG

TGCCAAAGGAGAATTGCCCTG

-

-

-

-

-

-

1.93

-

-

-

sof-miR-Seq538

GTGGCAGTAGAATTAATGAAGGGA

TTCTATCTCTATTAATTGTGTTGC

-

12.53

-

-

-

-

-

1.62

-

-

sof-miR-Seq565

GTTTTTCTCGCCGGGTGAGAAGGC

ATTCTCACTTGGGCGACGGAAAGG

-

3.13

-

-

-

-

-

-

-

-

sof-miR-Seq568

TAACAAGTTTAGGGATCTAGA

TTTTGGGTCCCTAAACTTGTT

-

-

2.47

3.30

-

-

-

-

-

0.80

sof-miR-Seq587

TAGCATGTTCCTCCTAAGAGC

TTCTTGGGAGGAGCATGCTAG

18.68

-

-

-

-

-

-

-

-

-

sof-miR-Seq594

TATCTAGAAAAGCTAAAACGT

GATGTTTTGGGTTTTCTAGAT

-

-

-

-

-

-

0.74

-

-

-

sof-miR-Seq598

TATTTGTGGACTCATGGACAT

GTCCGTGAGTCCACAAATAGG

3.11

3.13

-

-

-

-

1.78

-

2.48

1.76

sof-miR-Seq610

TCCATTCCAAATTGTAAGATG

GTCTTATAATTTGGAATGGAG

30.51

6.89

-

-

-

-

-

-

-

-

sof-miR-Seq648

TGGATGTACCAAAAAAGTCAAAGC

GTCGCTTTGACTTTTTTGGTACAT

-

-

-

-

-

-

-

3.24

-

-

sof-miR-Seq656

TGGGCGGTCACCTTGGCTAGC

TAGCCAAGGATGACTTGCCTA

-

65.13

27.51

38.64

72.99

62.81

-

-

-

-

sof-miR-Seq670

TGTTGAGGCTGGAGCGAAACTCGG

CAAGTTTGGTTTTGGTAATTAATG

-

12.53

-

-

-

-

-

-

-

-

sof-miR-Seq678

TTAGCGTCAAGAGACGAACACACT

AAGTGTGTTCCTCTATTTGACGCT

-

3.76

-

-

-

-

4.74

6.49

2.79

7.53

sof-miR-Seq700

TTGTGAGAGAAAAATACTGTTGGC

AACGAACAGTATTTTTCTCTTACA

-

16.28

-

-

-

-

-

-

-

-

sof-miR-Seq720

TTTTTGGTACATTGAATTTGC

AATTCGATGTACCAAAAAAGT

-

11.27

-

-

-

-

-

-

-

-

  1. ID: identification of sequences; CT: non inoculated plants; AA: under A. avenae infection; T 0 h and T 24 h: tolerant genotypes in control and drought stress conditions, respectively; S 0 h and S 24 h: sensitive genotypes in control and drought stress conditions, respectively; 0 h: plant without salt stress; 1 h, 6 h, 24 h: plants after salt treatment
  2. The number of mature miRNA reads were normalized by transcripts per million. The mature miRNA and miRNA* sequences were also shown.