Transcriptome analysis of carnation (Dianthus caryophyllus L.) based on next-generation sequencing technology

BMC Genomics

Table 3 Number of di-, tri-, tetra-, and pentanucleotide simple sequence repeats (SSRs) identified in 1,417,410 reads obtained by 454 sequencing

Dinucleotide repeat	Number of dinucleotide SSRs	%
AC/GT	150	15
AG/CT	321	33
AT/TA	170	17
CA/TG	81	8
GA/TC	250	26
Total	972	100
Trinucleotide repeat	Number of trinucleotide SSRs	%
AAG/CTT	616	6
AAT/ATT	652	7
AGA/TCT	787	8
ATC/GAT	614	6
CAA/TTG	811	8
GAA/TTC	871	9
TCA/TGA	768	8
Other trinucleotide repeats	4613	47
(<5% of each one)
Total	9732	100
Tetranucleotide repeat	Number of tetranucleotide SSRs	%
AAAT/ATTT	176	7
AATC/GATT	165	7
ATTA/TAAT	145	6
ATTG/CAAT	121	5
TCAA/TTGA	287	12
Other tetranucleotide repeats	1498	63
(<5% of each one)
Total	2392	100
Pentanucleotide repeat	Number of pentanucleotide SSRs	%
AAAAT/ATTTT	401	9
Other pentanucleotide repeats	3865	91
(<5% of each one)
Total	4266	100

ISSN: 1471-2164