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Table 1 Other R packages for RT-qPCR analyis

From: ReadqPCR and NormqPCR: R packages for the reading, quality checking and normalisation of RT-qPCR quantification cycle (Cq) data

Other R packages for RT-qPCR analyis

  

Package

Availability

Data

Quality

Normalisation

Reference Gene

Name

 

Import

Control

 

Selection

HTqPCR

http://www.bioconductor.org/packages/release/bioc/html/HTqPCR.html

Y

Y

Y

N

qpcR

http://cran.r-project.org/web/packages/qpcR/index.html

N

N

Y

N

qpcrNorm

http://www.bioconductor.org/packages/release/bioc/html/qpcrNorm.html

N

N

Y

N

SLqPCR

http://www.bioconductor.org/packages/release/bioc/html/SLqPCR.html

N

N

Y

Y

ddCt

http://www.bioconductor.org/packages/release/bioc/html/ddCt.html

Y

N

Y

N

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BMC Genomics

ISSN: 1471-2164

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