Table 4 Variable SNP calls discovered with resequencing and results after these were passed through our data filter.
Position | Description |
|---|---|
204781 | Missing after MUSCLE |
255578 | Homopolymer (8 T/A) |
355131 | Missing after MUSCLE |
756435 | Homopolymer (9 C/G) |
1070504 | SNP in Gap |
1097814 | Homopolymer (9 T/A) |
1179704 | Homopolymer (7 T/A) |
1205130 | Good (but ambiguous after looking at assembly) |
1368882 | Missing after MUSCLE |
1642240 | Missing after MUSCLE |
1693620 | Homopolymer (6 T/A) |
1713322 | Missing after MUSCLE |
1806153 | Homopolymer (6 T/A) |
2087876 | Missing after MUSCLE |
2354057 | Homopolymer (6 T/A) |
2545225 | Missing after MUSCLE |
3193883 | Homopolymer (7 T/A) |
3823524 | Good |
4257557 | Homopolymer (8 T/A) |
4545198 | SNP in Gap |
4545878 | Duplicated in other Salmonella (Elongation Factor Tu) |
4546413 | SNP in Gap |
4548105 | 23S rRNA |