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Archived Comments for: Short read sequence typing (SRST): multi-locus sequence types from short reads

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  1. SRST2

    Michael Inouye, University of Melbourne

    18 November 2013

    There is now a new and improved version, SRST2, which is currently available at:

    http://katholt.github.io/srst2/

    SRST2 is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

    A manuscript is in preparation.

    Competing interests

    None declared

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BMC Genomics

ISSN: 1471-2164

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