Table 3 Putative SNPs identified from the walnut BESs and their Infinium types and ADT design scores for Infinium genotyping
BES | No of BESs | No of BESs with SNPs | Total SNPs | Infinium I SNPs | Infinium II SNPs | Infinium II SNP Design score ≥ 0.9 (%) | Infinium II SNP Design score ≥ 0.7 (%) |
|---|---|---|---|---|---|---|---|
Genic | 29,223 | 9,672 | 14,829 | 1,810 | 13,019 | 11,112 (85.4%) | 12,891 (99.0%) |
Non-genic | 19,438 | 5,401 | 7,970 | 897 | 7,073 | 5,997 (84.8%) | 7,000 (99.0%) |
Total | 48,661 | 15,073 | 22,799 | 2,707 | 20,092 | 17,109 (85.2%) | 19,891 (99.0%) |