The core and unique proteins of haloarchaea

BMC Genomics

Table 4 Haloarchaeal protein clusters (HOGs) identified with nine and 13 genome data sets.

	No. of clusters with original 9 genome data set	No. of clusters removed from each category	No. of clusters added to each category	No. of clusters with 13 genome data set
cHOGs	799	15		784
cHOGs associated with COGs	288	6^a		282
cHOGs associated with COGs & KOGs	422	3^b		419
ucHOGs	89	6		83
nucHOGs	29	1^c		28
tucHOGs	60	5^d		55
aHOGs	3656		15	3671
aHOGs associated with COGs	409		6	415
aHOGs associated with COGs & KOGs	259		3	262
aHOGs with no associated COGs or KOGs	2988		6	2994

^a- Homolog for HOG0026 not identified in H. jeotgali. Homologs for HOG0069, HOG0288, and HOG1012 not identified in N. magadii. Homologs for HOG0231 and HOG0408 not identified in H. turkmenica.
^b- Homologs for HOG0166 and HOG0221 not identified in H. turkmenica. Homolog for HOG0518 not identified in H. jeotgali.
^c- Homolog for HOG0305 not identified in H. jeotgali.
^d- Homologs for HOG0048, HOG0714, and HOG0735 not identified in H. jeotgali. Homologs for HOG0120 and HOG0905 not identified in H. xanaduensis, N. magadii, or H. turkmenica.

ISSN: 1471-2164