|  |  |  | Gene expression fold changea |  | ||
---|---|---|---|---|---|---|---|
 | Gene | Strand | cresequence | Low CcpA induction | Medium CcpA induction | High CcpA induction | crebox to TSS distanceb |
High affinity cre boxes | |||||||
1 | acoR | upper | TGAAAGCGCTTTAT | â4.8 | â18.7 | â21.7 | â27 |
2 | acsA | lower | TGAAAGCGTTACCA | â2.3 | â2.5 | â2.7 | +44 |
3 | acuA | upper | TGAAAACGCTTTAT | â2.2 | â4.6 | â7.7 | â26 |
4 | amyE | upper | TGTAAGCGTTAACA | â2.6 | â10.7 | â12.9 | +4 |
5 | bglP | lower | TGAAAGCGTTGACA | â2.5 | â4.7 | â4.6 | â36 |
6 | cccA | lower | TGTAAGCGTATACA | â2.2 | â1.8 | â2.8 | â29 |
7 | citM | upper | TGTAAGCGGATTCA | â2.6 | â2.7 | â2.9 | +46 |
8 | cstA | lower | TGAATGCGGTTACA | â2.2 | â1.9 | â2.4 | +32 |
9 | dctP | upper | TGAAAACGCTATCA | â7.4 | â12.3 | â16.6 | â14 |
10 | glpF | upper | TGACACCGCTTTCA | â4.3 | â21.9 | â35.6 | â27 |
11 | gmuB | upper | TGTAAGCGTTTTAA | â3.0 | â15.6 | â35.8 | +6 |
12 | iolA-1 | lower | TGAAAGCGTTTAAT | â1.8 | â1.9 | â2.1 | +93 |
13 | iolA-2 (within iolB) | lower | TGAAAACGTTGTCA | â2.2 | â2.5 | â2.4 | +2404 |
14 | manR | upper | TGTAAACGGTTTCT | â2.0 | â3.7 | â8.0 | 0 |
15 | msmX | lower | AGAAAGCGTTTACA | â2.0 | â2.6 | â3.1 | â15 |
16 | rbsR | upper | TGTAAACGGTTACA | â6.7 | â15.2 | â23.1 | +6 |
17 | rocG | lower | TTAAAGCGCTTACA | â2.6 | â3.5 | â3.1 | +43 |
18 | sacP | lower | CGAAAACGCTATCA | â2.1 | â7.9 | â8.1 | â19 |
19 | sucC | upper | TGAAAGCGCAGTCT | â2.0 | â5.8 | â3.4 | 0 |
20 | treP | upper | TGAAAACGCTTGCA | â3.2 | â13.0 | â17.5 | +372 |
21 | uxaC | upper | TGAAAGCGTTATCA | â2.5 | â3.7 | â8.9 | +1237 |
22 | xsa | lower | TAAAAGCGCTTACA | â1.9 | â1.8 | â2.6 | +7 |
23 | xylA | upper | TGGAAGCGCAAACA | â2.4 | â11.9 | â11.1 | +144 |
24 | xynP | upper | TGAAAGCGCTTTTA | â4.0 | â11.0 | â17.9 | +230 |
25 | yisS | upper | AGAAAACGCTTTCT | â1.9 | â3.5 | â3.7 | +74 |
26 | yjmD | upper | TGAAAGCGGTTCAA | â2.2 | â2.4 | â8.8 | ND |
27 | ykoM | upper | TGCAAGGGCTTTCA | â2.0 | â3.4 | â3.5 | +150 |
28 | yrpD | upper | TGATAGCGTTTTCT | â1.9 | â8.0 | â6.8 | +127 |
29 | ytkA | lower | TGTAAGCGTTTGCT | â1.9 | â6.4 | â6.8 | ND |
30 | yulD | lower | TGAAAGCGCTATCT | â2.3 | â4.9 | â5.3 | ND |
31 | yvfK | lower | TTAAAGCGCTTTCA | â4.0 | â6.1 | â10.6 | +5 |
Low affinity cre boxes | |||||||
1 | abnA | lower | TGTAAGCGCTTTCT | â1.8 | â1.7 | â2.5 | +85 |
2 | acoA | lower | TGTAAGCGTTTGCT | â1.1 | â1.0 | â1.8 | +462 |
3 | citZ | lower | TGTAAGCATTTTCT | â1.5 | â1.8 | â2.1 | +88 |
4 | csbX | lower | TGAAAACGGTGCCA | â1.4 | â2.8 | â2.1 | â401 |
5 | cydA | lower | TGAAATGAATCGTT | 1.6 | 1.0 | â2.7 | â21 |
6 | drm | lower | TGAAAACGGTTTAT | â1.3 | â3.6 | â3.2 | â16 |
7 | gntR-1 | upper | TGAAAGTGTTTGCA | â1.3 | â2.8 | â3.2 | â41 |
8 | gntR-2 | upper | TGAAAGCGGTACCA | â1.3 | â2.8 | â3.2 | +148 |
9 | hutP | upper | TGAAACCGCTTCCA | â1.3 | â1.9 | â2.6 | +209 |
10 | lcfA | lower | TGAAAACGTTATCA | â1.4 | â2.6 | â2.6 | +450 |
11 | levD | lower | TGAAAACGCTTAAC | â1.5 | â1.2 | â2.2 | â45 |
12 | malA | upper | TGTAAACGTTATCA | â1.7 | â2.0 | â2.6 | +6 |
13 | mleN | lower | TGAAAGCGTTTTAG | â1.5 | â3.5 | â2.4 | +21 |
14 | msmR | upper | TGTAACCGCTTACT | â1.7 | â4.2 | â12.2 | â28 |
15 | mtlR | upper | TGAAAGCGTTTTAT | â1.5 | â2.7 | â2.5 | â16 |
16 | odhA | lower | TGGAAGCGTTTTTA | â1.6 | â6.6 | â3.4 | +21 |
17 | pbuG | upper | TGAAAACGTTTTTT | â1.1 | â1.5 | â1.9 | +245 |
18 | pta | lower | TGAAAGCGCTATAA | 1.3 | â3.2 | â2.7 | â55 |
19 | resA | lower | TAAAAACGCTTTCT | â1.1 | â1.9 | â1.9 | â72 |
20 | sigL | lower | GGAAAACGCTTTCA | â1.1 | â3.1 | â3.3 | ND |
21 | wprA | upper | TGTAAGCGGTATCT | â1.6 | â5.5 | â4.2 | +43 |
22 | yckB | lower | TGAAAACGCGATCA | â1.4 | â3.5 | â2.1 | â48 |
23 | ycsA | upper | AGAAAGCGCTTACG | â1.7 | â6.0 | â10.3 | +67 |
24 | ydzA | lower | TGAAAACGTGTCCA | â1.3 | â6.4 | â6.4 | +9 |
25 | yesL | upper | TGAAAGCGTTTTCC | â1.3 | â1.6 | â2.0 | +125 |
26 | yfiG | upper | AGAAAGCGGTTACA | â1.6 | â2.7 | â4.6 | +38 |
27 | yncC | upper | TGTAAACGGTTACA | â1.3 | â2.4 | â3.8 | +84 |
28 | yojA | lower | TGAAAGCGCTTTCT | 1.1 | â1.5 | â1.8 | +57 |
29 | yqgW | upper | TGAAAACGCTATCG | â1.1 | â4.5 | â4.2 | â39 |
30 | yqgY | upper | TGAAAATGTTTACA | â1.4 | â5.4 | â4.1 | â38 |
31 | ysbA | lower | TGTAAGCGCTTTAT | 1.0 | â3.8 | â7.6 | ND |
32 | ysfC | upper | TGAAAGCGTTTTTT | â1.5 | â1.5 | â2.0 | +196 |
33 | yugN | lower | TGAATGCGCTTTCT | â1.7 | â2.4 | â2.3 | ND |
34 | yuxG | lower | TGAAAACGGATACA | â1.2 | â4.2 | â6.1 | 0 |
35 | yvdG | lower | TGTAACCGCTTTCT | â1.4 | â1.5 | â2.1 | â28 |
36 | yxlH | upper | TTGAAACGCTTTCA | â1.4 | â2.0 | â2.3 | +260 |
37 | yydK | upper | TGTAAGCGGTTTAT | â1.5 | â3.2 | â2.4 | â21 |
38 | yyzE | lower | TGAAAGCGTAACCA | â1.2 | â3.0 | â2.1 | 0 |
Activating cre boxes | |||||||
1 | ilvB | lower | TGAAAGCGTATACA | 3.0 | 6.2 | 2.7 | +88 |
2 | opuE | lower | TGAAAGCGTTTTAT | 2.3 | 2.5 | 2.3 | â103 |
3 | ycbP | lower | TGAAAGCGCTCGCT | 2.5 | 3.3 | 2.6 | +30 |