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Table 2 Representative genes significantly up- and down-regulated in roots of cowpea cultivar B301 6 days post-inoculation with S. gesnerioides race SG3

From: Global changes in gene expression during compatible and incompatible interactions of cowpea (Vigna unguiculata L.) with the root parasitic angiosperm Striga gesnerioides

Category

Sequence ID

Annotation

Fold change

P- value

Transcription factors

33693912

POZ/BTB containing-protein AtPOB1

5.57

0.003

 

33693491

asymmetric leaves 1, phantastica (AS1)

5.25

0.027

 

33670861

zinc finger (RING-H2 type) protein-related

4.8

0.003

 

33684347

basic helix-loop-helix (bHLH) DNA-binding

3.27

0.019

Secondary metabolism

33658828

chalcone synthase

2.03

0.050

Signal transduction

33685813

serine carboxypeptidase-like 23 (scpl23)

12.75

0.000

 

33673870

5'-AMP-activated protein kinase beta-2 subunit

3.57

0.040

 

33649427

cytochrome P450 (CYP722A1)

2.57

0.006

 

33684072

CDKE1 (Cyclin-dependent kinase E1)

2.41

0.016

Cellular transport

33666738

aluminum activated malate transporter

17.62

0.006

 

33676680

folate transporter 1 (FOLT1)

4.15

0.036

Defense related

33646015

chitinase 1 precursor, narbonin

44.57

0.000

 

33690846

cationic peroxidase 1 precursor

5.18

0.005

 

33662461*

class III peroxidase

3.83

0.004

 

33663803

class III peroxidase

3.71

0.039

 

33663380

beta galactosidase7 (BGAL7)

3.13

0.048

 

33651959

1,3-beta-D-glucanase

2.84

0.007

 

33680262

disease resistance protein (TIR-NBS-LRR class) family

1.91

0.015

Plant growth regulators

33646791

jasmonate-zim domain protein 1 (JAZ1)

2.23

0.039

Cell component

33692312

copper ion-binding laccase

4.41

0.039

 

33677650

laccase

3.8

0.042

 

33686210

pectin methylesterase

3.24

0.011

Unknown protein

33675717

unnamed protein product

12.86

0.023

 

33657146

unnamed protein product

4.78

0.040

Unknown protein

33684891

expressed protein contains Pfam profile PF03140

-8.83

0.000

 

33657530

expressed unknown protein

-4.52

0.037

Metabolism

33686080

C2 domain-containing protein similar to phloem protein

-6.54

0.000

 

33681048

ferric reductase

-4.39

0.009

Transcription

33667792

aluminum-activated malate transporter

-4.9

0.036

Cell cycle, DNA processing

33677672

RAD51A recombination protein

-4.52

0.042

  1. *genes verified by qRT PCR.
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BMC Genomics

ISSN: 1471-2164

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