From: Coevolution between simple sequence repeats (SSRs) and virus genome size
Repeat motif (group) | Frequency | Percentage (%) |
---|---|---|
Mono- | 19534 | 37.36 |
A | 8564 | 16.38 |
C | 1434 | 2.74 |
G | 1408 | 2.69 |
T | 8128 | 15.54 |
Di- | 25452 | 48.68 |
AC/CA | 3358 | 6.42 |
AG/GA | 3124 | 5.97 |
AT/TA | 9029 | 17.27 |
CG/GC | 4094 | 7.83 |
CT/TC | 2664 | 5.09 |
GT/GT | 3183 | 6.09 |
Tri- | 6855 | 13.11 |
AAT/ATA/ATT/TAA/TAT/TTA | 1447 | 2.77 |
AAC/ACA/CAA/GTT/TGT/TTG | 666 | 1.27 |
AAG/AGA/CTT/GAA/TCT/TTC | 910 | 1.74 |
ACC/CAC/CCA/GGT/GTG/TGG | 613 | 1.17 |
ACG/CGA/CGT/GAC/GTC/TCG | 479 | 0.92 |
AGT/ACT/CTA/GTA/TAC/TAG | 228 | 0.44 |
AGC/CAG/CTG/GCA/GCT/TGC | 540 | 1.03 |
AGG/CCT/CTC/GAG/GGA/TCC | 538 | 1.03 |
ATG/ATC/CAT/GAT/TCA/TGA | 736 | 1.41 |
GGC/CCG/CGC/CGG/GCC/GCG | 698 | 1.33 |
Tetra- | 274 | 0.52 |
Penta- | 48 | 0.09 |
Hexa- | 125 | 0.24 |
Total | 52288 | 100.00 |