Repeat type | Number of elements | Length occupied (nucleotides) | Percentage of sequence |
---|---|---|---|
Retroelements | 792 | 112,220 | 0.75 |
 SINES: | 177 | 19,814 | 0.13 |
 LINES: | 488 | 76,335 | 0.51 |
  L2/CR1/Rex | 459 | 72,305 | 0.48 |
  RTE/Bov-B | 3 | 160 | 0.001 |
  L1/CIN4 | 25 | 3,655 | 0.025 |
 LTR elements: | 127 | 16,071 | 0.11 |
  Bel/Pao | 1 | 54 | 0.0004 |
  Ty1/Copia | 6 | 1,490 | 0.01 |
  Gypsy/DIRS1 | 65 | 10,075 | 0.07 |
  Retroviral | 52 | 4,252 | 0.03 |
DNA transposons | 105 | 11,133 | 0.07 |
 Hobo-Activator | 30 | 1,698 | 0.01 |
 Tc1-IS630-Pogo | 6 | 732 | 0.005 |
 PiggyBac | 15 | 2,039 | 0.01 |
 Tourist/Harbinger | 1 | 59 | 0.0004 |
Unclassified interspersed repeat | 15 | 1,187 | 0.008 |
Small RNA* | 61 | 7,028 | 0.05 |
Satellites | 44 | 5,917 | 0.04 |
Simple repeats | 786 | 30,947 | 0.21 |
Low complexity | 1072 | 48,337 | 0.32 |