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Table 2 Annotation summary

From: Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae

Classes of reads

Raw reads

Read clusters

Necrotic

Unaffected

Merged clusters with > =5 reads

7412475

5568204

24,808

Un-annotated

317709

135674

15032

Annotated

7094766

5432530

9776

rRNA

5707949

296778

25

miRNA(mirBase hairpin)

783324

4652256

169

Protein

204431

12494

9260

snRNA

178170

2757

40

snoRNA

172592

416729

169

yRNA

29110

18711

5

Conflicts

9511

22853

22

tRNA

6327

6397

73

scaRNA

1801

854

11

Others

1551

2701

3

  1. The read clusters with at least five reads are subjected to annotation. The ncRNAs are annotated with our in house ncRNA pipeline; the mRNAs are annotated according to the Ensembl protein annotation of the pig. In case of overlapping annotation the read clusters were merged. The classification of the ncRNAs is in accordance with Rfam. Small Cajal body-specific RNA (scaRNA).
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BMC Genomics

ISSN: 1471-2164

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