Table 1 Arrays analysed
No | Technique | Platform | Used strains | Growth conditions | Study | References | Accession | Technology |
|---|---|---|---|---|---|---|---|---|
1 | Microarray | TIGR (30 k v1) | Af293 | 5 × 106 conidia per ml, inoculated in complete media, for 17 hours, at 30–37°C, 160 rpm | Temperature shifts (30 to 37°C and 30 to 48°C) | [4] | ArrayExpress: E-MEXP-332 | DNA amplicon microarray |
2 | Microarray | Custom (Roche) | Af293 | 108 conidia per ml, inoculated in potato dextrose media, for 24 hours, at 28°C, 160 rpm | Effects on growth in the presence of TSA | [18] | GEO: GSE19682 | 60mer oligonucleotide |
3 | Microarray | Febit | CEA17 | 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm | Comparison among wild type, ΔgprC, and ΔgprD mutant | [25] | Omnifung | in situ oligonucleotide |
4 | Microarray | TIGR (22 K v3) | ATTC 46645 | 107 conidia per ml, inoculated in Brian’s media, for 14 hours, at 37°C, 150 rpm | Comparison between planktonic and biofilm growth | [17] | GEO: GSE19430 | in situ oligonucleotide |
5 | Microarray | Febit | CEA17 | 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm | Comparison between wild type and ΔmpkA mutant | [8] | Omnifung | in situ oligonucleotide |
6 | mRNA-Seq | Illumina | ATTC 46645 Af293 CEA10* | 107 conidia per ml, inoculated in Brian’s media, for 14 hours, at 37°C, 150 rpm | Comparison between planktonic and biofilm growth | [12] | On enquiry | GAIIx |
7 | mRNA-Seq | Illumina | CEA17 | 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm | Comparison between wild type and ΔmpkA mutant | This study | ArrayExpress: E-MTAB-1236 | GAIIx |
8 | Proteomic | 2D-DIGE | ATTC 46645 | 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm | Design the A. fumigatus mycelial and mitochondrial proteome map | [21] | Omnifung | MALDI-TOF/TOF |
9 | Proteomic | 2D-DIGE | CEA17 | 106 conidia per ml, inoculated in minimal media, for 16 hours, at 37°C, 200 rpm | Comparison between wild type and ΔmpkA mutant | This study | On enquiry | MALDI-TOF/TOF |