Gene | Position | Strand | Gene length (bp) | Exons | Exons verified* | Average coverage per nucleotide | Comparison with other galliformMHCs | dN/dS | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chicken | Turkey | Quail | Pheasant | ||||||||||||
Nucleotide identity | Amino Acid Identity | Nucleotide identity | Amino Acid Identity | Nucleotide identity | Amino Acid Identity | Nucleotide identity | Amino Acid Identity | ||||||||
BTN1(partial) | 112-4076 | + | 786 | 14 | 1 | 34.6 | Â | Â | Â | Â | Â | Â | Â | Â | Â |
BTN2 | 7150-10374 | + | 921 | 8 | 0 | 0 | 0.797 | 0.738 | 0.913 | 0.894 | / | / | / | / | 0.470 |
BG1 | 12132-16240 | - | 804 | 14 | 1 | 1.0 | 0.881 | 0.826 | 0.851 | 0.800 | 0.832 | 0.771 | / | / | 0.335 |
Blec2 | 18188-20712 | - | 825 | 6 | 1 | 5.8 | 0.698 | 0.595 | 0.706 | 0.593 | 0.705 | 0.607 | / | / | 0.433 |
Blec1 | 23007-24547 | + | 471 | 5 | 1 | 1.0 | 0.934 | 0.917 | 0.949 | 0.942 | 0.927 | 0.894 | 0.958 | 0.947 | 0.230 |
BLB1** | 25386-26738 | - | 792 | 6 | 3 | 18.1 | 0.920 | 0.863 | 0.932 | 0.886 | 0.884 | 0.826 | 0.934 | 0.890 | 0.805 |
TAPBP | 27591-31078 | + | 1296 | 8 | 7 | 21.5 | 0.920 | 0.882 | 0.951 | 0.935 | 0.891 | 0.856 | 0.942 | 0.919 | 0.301 |
BLB2** | 32031-33413 | + | 792 | 6 | 5 | 10.6 | 0.933 | 0.897 | 0.928 | 0.875 | 0.890 | 0.818 | 0.943 | 0.902 | 0.924 |
BRD2 | 34798-40437 | - | 2340 | 12 | 12 | 8.7 | 0.957 | 0.996 | 0.976 | 0.996 | 0.934 | 0.995 | 0.971 | 0.997 | 0.011 |
DMA | 44248-46392 | + | 789 | 4 | 3 | 12.2 | 0.913 | 0.889 | 0.937 | 0.924 | 0.856 | 0.817 | 0.943 | 0.928 | 0.375 |
DMB1 | 46628-48880 | + | 1020 | 8 | 2 | 1.0 | 0.864 | 0.794 | 0.851 | 0.793 | 0.847 | 0.774 | 0.923 | 0.876 | 0.496 |
DMB2 | 49322-52121 | + | 777 | 6 | 5 | 23.0 | 0.921 | 0.911 | 0.951 | 0.938 | 0.859 | 0.822 | 0.952 | 0.955 | 0.235 |
BF1*** | 52919-54907 | + | 1056 | 8 | 5 | 1.3 | 0.858 | 0.769 | 0.879 | 0.789 | 0.835 | 0.734 | 0857 | 0.770 | 0.733 |
TAP2 | 56357-59553 | - | 2106 | 9 | 6 | 2.2 | 0.927 | 0.934 | 0.952 | 0.950 | 0.897 | 0.893 | 0.940 | 0.932 | 0.186 |
TAP1 | 60134-64265 | + | 1755 | 11 | 2 | 1.0 | 0.932 | 0.938 | 0.957 | 0.966 | 0.905 | 0.915 | 0.954 | 0.949 | 0.195 |
BF2*** | 65364-67372 | - | 1077 | 8 | 6 | 16.1 | 0.860 | 0.749 | 0.888 | 0.802 | 0.826 | 0.737 | 0.870 | 0.767 | 0.767 |
C4 | 68440-82244 | + | 4875 | 38 | 4 | 1.4 | 0.911 | 0.940 | 0.933 | 0.958 | / | / | 0.963 | 0.963 | 0.207 |
CenpA | 82653-84175 | + | 429 | 4 | 0 | 0 | 0.967 | 0.993 | / | / | / | / | 0.968 | 0.979 | 0.037 |
CYP21(partial) | 84680-88358 | + | 1326 | 10 | 2 | 1.0 | Â | Â | Â | Â | Â | Â | Â | Â | Â |