De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

Table 1 A summary of sequences included in the pepper Sanger-EST assembly

Sequence Type/Species	No. of Sequences Before Filtering	Total on the Chip
ESTs		123,489
C. annuum	125,320
C. chinense	372
Genomic		465
C. annuum	318
C. baccatum	28
C. chinense	31
C. frutescens	27
Others	61
Annotated mRNA		515
C. annuum	427
C. chinense	76
Others	12
COSII	642	642

ISSN: 1471-2164