Complete sequence of heterogenous-composition mitochondrial genome (Brassica napus) and its exogenous source

BMC Genomics

Table 1 SNP in protein-coding genes of mtDNA between oguC and nap

Gene	Nucleic acid^a	Amimo acid^b	Mutation type^c	SNP type
nad1	571 C-T	191 L-F	N	transition
nad2	367 T-C	123 C-R	N	transition
nad3	265 T-C		S	transition
nad4	77 C-T	26 P-L	N	transition
	1205 C-T	402 P-L	N	transition
nad7	1079 T-C	360 F-S	N	transition
cox1*	109 C-T		S	transition
	111 T-A		S	transversion
	786 T-G		S	transversion
cox2-1	379 T-C	127 W-R	N	transition
ccmB	353 G-A		N	transition
ccmC**	126 A-G		S	transition
	155 G-A	52 R-H	N	transition
	338 G-A	113 R-K	N	transition
	351 G-A		S	transition
	476 C-A		S	transversion
	533 G-A	178 G-A	N	transition
	551 G-A	184 G-D	N	transition
ccmFC	283 G-A	95 E-K	N	transition
ccmFN1	361 T-A	121 F-I	N	transversion
	1000 C-T	334 L-F	N	transition
ccmFN2	380 C-T	127 L-S	N	trnasition
atp1	987 T-C		S	transition
atp4	176 C-T	59 A-V	N	transition
atp8*	370 A-C	124 L-I	N	transversion
	448 T-C	150 A-V	N	transition
atp9	64 A-G	22 I-V	N	transition
rps3	1254 A-C		S	transversion
	1320 A-C		S	transversion
rps4	189 T-G		S	transversion
	776 C-T	259 S-F	N	transition
rps12*	12 T-G	4 F-L	N	transversion
	336 A-C	112 R-S	N	transversion
	345 A-C		S	transversion
rpl2	464 G-A	155 G-D	N	transition
	840 C-T		S	transition
	1004 C-T	335 S-L	N	transition
rpl5	515 T-C	172 L-P	N	transition
rpl16	506 C-T	169 P-L	N	transition

^a Location of base mutation, ^bLocation and switch of amino acid mutation, ^c S,Synonymous; N, Non-synonymous.
* Nucleotide sequence of genes identical to Raphanus sativus ** Two SNPs when compared to Raphanus sativus.

ISSN: 1471-2164