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Table 1 Summary of transcriptome sequencing data

From: Comparative transcriptomic analysis of roots of contrasting Gossypium herbaceum genotypes revealing adaptation to drought

(a)

 

       Reads

       Bases

      Contigs

Singleton

Av. Contig length

Av. S. length

GujCot-21

55, 620

13, 020, 140

1,281

30, 501

481.7 bp

237.8 bp

RAHS-IPS 187

49, 308

11, 199, 207

858

30, 776

532.9 bp

228.6 bp

Supercontigs

1, 04, 928

24,219, 347

2, 664

50, 531

508.7 bp

231.7 bp

(b)

 

       TAIR

       NR

      Cotton EST

 

       Contigs

       Singleton

       Contigs

Singleton

       Contigs

Singleton

GujCot-21

1, 011

17, 081

1, 056

18, 392

779

14,476

RAHS-IPS- 187

682

16, 856

713

9, 885

488

12, 383

Super-Contigs

2, 080

26, 838

2, 163

17204

1, 537

20, 552

(c)

Contigs

       TAIR

       NR

Cotton_EST

Total hits

       No- hits

 

GujCot-21

1, 011

1, 056

779

1266

15

 

RAHS-IPS-187

682

713

488

855

2

 

Supercontigs

2, 080

2, 163

1, 537

2432

232

 
  1. (a) Sequencing and assembly output (b) Annotation of contigs against NCBI-NR,TAIR and cotton EST (c) total number of annotated and novel contigs (no hit).
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BMC Genomics

ISSN: 1471-2164

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