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Table 3 Differentially expressed genes involved in membrane transport channels and cell wall synthesis under drought stress in Vagad and RAHS-14

From: Comparative transcriptomic analysis of roots of contrasting Gossypium herbaceum genotypes revealing adaptation to drought

(a) Membrane transporter genes family

Genotypes

Cotton probe set ID

TAIR 10 hit

Fold change

p-value

Descriptions

RAHS-14D

 

Ghi.1932.1.S1_at

AT3G46740

6.862507

0.0339456

outer membrane translocase

 

Ghi.3760.1.S1_s_at

AT1G19910

2.9521239

0.02668785

ATPase, F0/V0 complex, subunit C protein

 

Ghi.4450.1.A1_at

AT3G01390

2.2963412

0.01776607

V-type proton ATPase subunit G1

 

Ghi.5565.6.S1_s_at

AT1G15520

2.354963

0.02798233

ABC transporter G family member 40

 

Ghi.9771.1.S1_x_at

AT2G33040

3.4228158

0.02484926

Mitochondorial H + − or Na + −translocating F-type

 

GhiAffx.5294.2.S1_x_at

AT2G42210

3.0888186

0.03420474

inner membrane translocas

 

Gra.3081.1.A1_s_at

AT4G32530

8.158294

0.04811877

V-type and A-type ATPase (F-ATPase) Superfamily

 

Gra.700.1.A1_s_at

AT1G15690

3.1466656

0.00362699

vacuolar membrane proton pump

RAHS-14 C

 

Ghi.3763.1.A1_s_at

AT3G63380

5.7281384

0.00042

The P-type ATPase (P-ATPase) Superfamily

Vagad D

 

Ghi.8876.1.A1_at

AT1G51650

2.1752877

0.0222851

Mitochondorial H + − or Na + −translocating F-type

 

Ghi.9195.1.A1_s_at

AT1G78720

3.98914

0.0432709

preprotein translocase Sec61 alpha subunit

 

GhiAffx.13955.1.A1_at

AT3G47730

2.8928177

0.02658764

The ATP-binding Cassette (ABC) Superfamily

 

GraAffx.10962.1.A1_at

AT3G47780

2.3352501

0.04103383

ABC transporter A family member 7

 

GraAffx.18588.1.A1_at

AT3G59140

2.7955472

0.04233996

The ATP-binding Cassette (ABC) Superfamily

Vagad C

 

GraAffx.29143.1.S1_s_at

AT3G13080

2.0128014

0.0003014

The ATP-binding Cassette (ABC) Superfamily

(b) Cell wall synthesis related gene family

RAHS-14 D

 

Ghi.3798.1.A1_s_at

AT2G21770

5.2988324

0.02936104

cellulose synthase

 

Ghi.6435.1.A1_at

AT5G24090

12.502564

0.02899352

acidic endochitinase (CHIB1)

 

Ghi.653.1.S1_s_at

AT5G05170

2.3362005

0.04479192

cellulose synthase (Ath-B)

 

Ghi.825.2.S1_x_at

AT2G40610

7.838081

0.00000635

expansin, putative (EXP8)

 

GhiAffx.1589.84.S1_x_at

AT5G17310

2.6701603

0.02671632

UTP--glucose-1-phosphate uridylyltransferase

 

GhiAffx.18156.1.S1_at

AT3G55250

2.8398817

0.04666388

expressed protein

 

GhiAffx.36018.1.S1_at

AT4G23920

2.1763752

0.01826835

UDP-glucose 4-epimerase

 

GhiAffx.46297.1.S1_s_at

AT4G17030

3.4000947

0.02354693

UTP--glucose-1-phosphate uridylyltransferase

 

GhiAffx.49705.1.A1_s_at

AT1G26810

3.7181776

0.048232

galactosyltransferase family protein

 

GhiAffx.52955.1.A1_at

AT4G26940

2.0691934

0.0303665

galactosyltransferase family protein

 

GhiAffx.5996.1.S1_s_at

AT3G29090

3.9073741

0.02458842

galactosyltransferase family protein

 

GraAffx.29883.2.S1_s_at

AT4G39210

10.707062

0.00723294

ADP-glucose pyrophosphorylase

RAHS-14 C

 

Ghi.10493.1.S1_s_at

AT5G57560

8.634004

0.0000114

xyloglucan:xyloglucosyl transferase (TCH4)

 

Ghi.1127.2.A1_x_at

AT4G25810

7.3133554

0.00000863

xyloglucan:xyloglucosyl transferase (XTR6)

 

Ghi.1272.1.A1_s_at

AT2G28470

2.0890183

0.0000454

beta-galactosidase

 

Ghi.4531.1.A1_at

AT4G20460

2.1103513

0.00137449

NAD-dependent epimerase

 

GhiAffx.7421.1.S1_s_at

AT5G44030

50.340942

0.0000394

cellulose synthase (IRX5)

 

Gra.1335.1.A1_s_at

AT5G22740

2.0989435

0.00195653

glycosyl transferase family

Vagad D

 

Ghi.1127.4.S1_x_at

AT4G25810

2.0596108

0.02497086

xyloglucan:xyloglucosyl transferase

 

Ghi.5287.1.S1_s_at

AT4G34150

3.1211743

0.03486373

pectinesterase family protein

 

Ghi.6619.1.S1_at

AT2G39700

2.451212

0.04148584

expansin, putative (EXP4)

 

Ghi.6749.1.S1_s_at

AT4G38400

2.9026875

0.04047799

expansin family protein (EXPL2)

 

Ghi.7660.1.S1_s_at

AT3G43270

2.7740989

0.0411485

pectate lyase family protein

 

Ghi.9637.2.S1_s_at

AT3G62830

3.7921665

0.03394477

NAD-dependent epimerase/dehydratase family protein

 

Gra.1335.1.A1_s_at

AT5G22740

2.9214976

0.03656408

glycosyl transferase family 2 protein

 

Gra.1563.1.S1_s_at

AT2G28950

3.9881666

0.01430987

expansin, putative (EXP6)

 

Gra.1984.1.A1_at

AT1G04680

4.803666

0.00806574

glycoside hydrolase family

 

Gra.2243.1.A1_s_at

AT5G09760

2.1072824

0.04628986

pectate lyase family protein

 

Gra.2265.1.A1_at

AT5G13870

2.4477193

0.04345882

xyloglucan:xyloglucosyl transferase (EXGT-A4)

 

Gra.2300.1.A1_at

AT2G45470

4.5964513

0.03349594

pectinesterase family protein

 

Gra.2380.1.A1_s_at

AT1G67750

2.7641332

0.01198629

glycoside hydrolase family

 

Gra.2812.1.S1_s_at

AT4G03210

2.5062635

0.02250669

xyloglucan:xyloglucosyl transferase

 

Gra.377.1.S1_s_at

AT2G06850

3.0282483

0.02482058

xyloglucan:xyloglucosyl transferase (EXGT-A1)

 

GraAffx.8742.1.S1_at

AT1G32170

15.896784

0.00978865

xyloglucan:xyloglucosyl transferase (XTR4)

Vagad C

     
 

Ghi.5772.1.S1_a_at

AT4G17030

5.8524

6.0179E-07

expansin-related

 

Ghi.6435.1.A1_at

AT5G24090

2.62142

1.7468E-06

acidic endochitinase (CHIB1)

 

GraAffx.8742.1.S1_at

AT1G32170

3.4125

0.00012776

xyloglucan:xyloglucosyl transferase (XTR4)

 

Ghi.10826.1.S1_at

AT3G57270

28.2959

2.4257E-07

glycosyl hydrolase family

  1. RAHS-14D and VagadD shows probe sets analysis under drought stress and RAHS-14C and Vagad C under control condition. Cotton Probe converted unto Arabidopis homologous ID at criteria 50 % query match and e-value cutoff 1e-10.
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BMC Genomics

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