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Table 3 Key cytokine and signaling pathway elicited in response to CBHA at 6h and 24h in H9c2 cells*

From: Pan-histone deacetylase inhibitors regulate signaling pathways involved in proliferative and pro-inflammatory mechanisms in H9c2 cells

Control versus CBHA (6 h)

Control versus CBHA (24 h)

Gene pathway

Total connections (No. of focus genes)

Gene pathway

Total connections (No. of focus genes)

TNF

45 (22)

CDKN1A

65 (35)

Myc

43 (18)

TP53

60 (35)

HNF4A

32 (18)

IL-6

50 (34)

PTEN-PI3K-Akt

76 (17)

HNF4A

41 (30)

ERK-p38-JNK

73 (17)

CDKN2A

43 (25)

NFκΒ

40 (16)

ERK- p38-JNK

52 (21)

IFNγ

45 (12)

NFκΒ

41 (17)

FOS

43 ( 8 )

IFNγ

38 (17)

AP1

31 ( 8 )

Cyclin A

29 (12)

Insulin

28 ( 8 )

PI3K-Akt

41 (10)

TP73

16 ( 7 )

MAPK

24 ( 8 )

CDKN2A

20 ( 5 )

Insulin

24 ( 5 )

  1. *DEGs in response to CBHA were subject to IPA as detailed in “Material and Methods”. Gene pathway with total number of connections (direct and indirect) and focus genes are hierarchically arranged according to the number of focus genes. The relative position of the p53-specific network elicited at 6 h (11th) and 24 h (2nd) is significant.