Table 2 Partial list of proteins upstream and downstream of the transposons
Scaffold | Transposon | Gene | Approximate distance (bp) | Identity (%) | Similarity (%) | Reference (GenBank) |
|---|---|---|---|---|---|---|
1 | LTR-Gypsy | PX Domain | D: 4,100 | 63 | 78 | XP_001263638.1 |
1 | LTR-Gypsy | Glutaminase A | U: 7,400 | 65 | 77 | XP_001930459.1 |
1 | LTR-Paste | E2-ubiquitin | D: 4900 | 72 | 78 | XP_001593719.1 |
1 | LTR-Gypsy | Malate synthase | D: 9,000 | 84 | 91 | XP_001797883.1 |
1 | LTR-Gypsy | ABC transporter | D: 5,500 | 70 | 83 | XP_001727592.1 |
1 | LTR-Gypsy | Glutamate cysteine ligase | D: 4,300 | 77 | 86 | XP_001940223.1 |
1 | LTR-Copia | Serine/threonine kinase | U: 790 | 64 | 77 | XP_001819711.2 |
1 | LTR-Gypsy | NADPH-cytochrome P450 | D: 3,950 | 51 | 68 | XP_001818965.1 |
1 | LTR-Gypsy | MYND Domain | D: 3,300 | 52 | 65 | XP_750050.1 |
1 | LTR-Gypsy | 2-methylcitrate synthase | U: 3,300 | 83 | 91 | XP_965076.1 |
1 | LTR-Gypsy | WD40 Domain | D: 4,500 | 61 | 71 | XP_002372958.1 |
1 | LTR-Gypsy | Fructose-2,6-biphosphatase | U: 4,800 | 73 | 83 | XP_001546391.1 |
2 | LTR-Gypsy | Acetyl-CoA C-acyltransferase | D: 7,000 | 70 | 81 | XP_001392657.1 |
2 | LTR-Gypsy | Sugar transporter | D: 900 | 57 | 73 | XP_003069717.1 |
2 | LTR-Gypsy | Acetamidase | D: 3,700 | 58 | 70 | XP_001940983.1 |
2 | LTR-Gypsy | LaeA | D: 3,100 | 50 | 68 | XP_001827612.2 |
2 | LTR-Gypsy | Hsp70 | D: 6,500 | 69 | 74 | XP_001818154.2 |
2 | LTR-Gypsy | Chitin synthase | U: 2,200 | 70 | 82 | XP_003071333.1 |
2 | LTR-Copia | DNA helicase | D: 1,700 | 54 | 66 | XP_001824182.2 |
3 | LTR-Gypsy | ATP synthase | U: 5,000 | 84 | 92 | EFX00799.1 |
3 | LTR-Gypsy | Proteasome Activator Subunit4 | D: 1,000 | 59 | 75 | XP_751700.1 |
4 | LTR-Gypsy | Glucanase | D: 3,400 | 60 | 78 | XP_002624797.1 |
5 | LTR-Gypsy | Malate dehydrogenase | D: 2,800 | 66 | 75 | XP_001931613.1 |
5 | LTR-Gypsy | SNARE Domain | U: 4,600 | 62 | 77 | XP_001941286.1 |
6 | LTR-Gypsy | Aflatoxin B1 aldehyde reductase | D: 8,000 | 59 | 79 | XP_002845070.1 |
6 | LTR-Gypsy | Alcohol dehydrogenase | U: 5,500 | 73 | 82 | XP_001825083.1 |
7 | LTR-Gypsy | Gamma-glutamyl transpeptidase | D: 6,800 | 65 | 78 | XP_001933197.1 |
8 | LTR-Gypsy | Aspartate aminotransferase | U: 1,000 | 70 | 77 | XP_001933414.1 |
9 | DNA-Mariner | Ribose5-phosphate isomerase A | D: 800 | 63 | 79 | XP_003069185.1 |
9 | LTR-Gypsy | FAD Domain | U: 1,000 | 64 | 79 | XP_001263972.1 |
10 | LTR-Gypsy | MFS transporter | U: 5,000 | 63 | 77 | XP_749221.1 |
10 | LTR-Gypsy | Sucrose-6-phosphate hydrolase | D: 9,000 | 56 | 73 | XP_001936697.1 |
10 | LTR-Gypsy | Ribonuclease H1 | D: 800 | 67 | 76 | XP_001823167.2 |
10 | LTR-Gypsy | Phosphoglycerate mutase | D: 7,000 | 65 | 78 | ZP_08027076.1 |
14 | LTR-Copia | Histone H3 | U: 100 | 70 | 84 | XP_760063.1 |