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Table 3 TpA/ApT and (CpA + TpG)/(ApC + GpT) ratios for transposons in the genome of M. fijiensis

From: Abundance, distribution and potential impact of transposable elements in the genome of Mycosphaerella fijiensis

Transposon (Group)

Number of sequences

TpA/ApT value*

(CpA + TpG)/(ApC + GpT) value*

Mutator

3

2.03

0.36

Mariner1

4

1.93

0.32

Mariner2

3

2.09

0.55

LTR-Copia

3

1.92

0.34

LTR-Gypsy1

7

2.07

0.27

LTR-Gypsy2

6

2.10

0.25

LTR-Gypsy3

11

2.06

0.23

LTR-Gypsy4

41

1.93

0.43

  1. *Standard reference values of the RIP indices are: TpA/ApT > 0.89 and (CpA + TpG)/(ApC + GpT) < 1.03 [51].
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BMC Genomics

ISSN: 1471-2164

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