Skip to main content

Table 1 Sampling information

From: Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing

Species/subspecies

n

BYU #

Location

Drainage (Basin)

Latitude/Longitude

Cutthroat Trout (Oncorhynchus clarkii)

     

Bonneville cutthroat trout

10

33807

Chalk Creek, UT

Weber River (Bonneville)

40° 59’ 44” N, 111° 03’ 31” W

O. c. utah

 

134304

Trout Creek, UT

Deep Creek Mts. (Bonneville)

39° 45’ 55” N, 113° 55’ 45” W

  

135225

Birch Creek, UT

Beaver River (Bonneville)

38° 12’ 59” N, 112° 31’ 49” W

  

179753

Nebo Creek, UT

Spanish Fork River (Bonneville)

39° 51’ 04” N, 111° 38’ 26” W

  

93975

Main Creek, UT

Provo River (Bonneville)

40° 19’ 02” N, 111° 20’ 06” W

  

135133

Willard Creek, NV

Spring Valley

39° 01’ 22” N, 114° 23’ 33” W

  

134577

Lost Creek, UT

Sevier River (Bonneville)

38° 43’ 14” N, 111° 42’ 06” W

  

181736

Deadman Creek, NV

Smith Creek (Bonneville)

39° 19’ 40” N, 114° 08’ 23” W

  

181774

Pine Creek, NV

Spring Valley

38° 59’ 09” N, 114° 22’ 34” W

  

181752

Hampton Creek, NV

Hampton Creek (Bonneville)

39° 14’ 39” N, 114° 06’ 28” W

Bear River Bonneville cutthroat trout

10

135526

Yellow Creek, UT

Bear River

40° 58’ 58” N, 110° 57’ 35” W

O. c. utah

 

136684

Dog Creek, WY

Bear River

43° 37’ 52” N, 110° 48’ 11” W

  

136733

Cottonwood Creek, WY

Upper Salt River (Bear R.)

42° 37’ 52” N, 110° 50’ 34” W

  

179631

Smith’s Fork, WY

Bear River

42° 10’ 34” N, 110° 53’ 22” W

  

135528

Yellow Creek, UT

Bear River

40° 58’ 58” N, 110° 57’ 35” W

  

179602

Daniel Fish Hatchery, WY

N/A

 
  

179682

Raymond Creek, WY

Bear River (Bonneville)

42° 16’ 32” N, 111° 00’ 33” W

  

179702

Woodruff Reservoir, UT

Bear River (Bonneville)

41° 27’ 52” N, 111° 19’ 27” W

  

179703

Woodruff Reservoir, UT

Bear River (Bonneville)

41° 27’ 52” N, 111° 19’ 27” W

  

239318

Weber River, UT

Bonneville Basin

40° 46’ 54” N, 110° 59’ 41” W

Coastal cutthroat trout

10

91991

Slippery Lake, AK

Kuiu Island (Pacific Ocean)

56° 13’ N, 134° 13’ W

O. c. clarki

 

92742

Abernathy Creek, OR

Willamette River (Columbia R.)

45° 19’ 56” N, 122° 32’ 32” W

  

130929

Lost Creek, OR

Coos River (Pacific Ocean)

43° 09’ 48” N, 123° 42’ 45” W

  

130905

Hemlock Creek, WA

Cowlitz River (Columbia R.)

46° 15’ 48” N, 122° 43’ 45” W

  

130906

Hemlock Creek, WA

Cowlitz River (Columbia R.)

46° 15’ 48” N, 122° 43’ 45” W

  

91953

Hackleman Creek, OR

Willamette River (Columbia R.)

44° 24’ 45” N, 122° 02’ 32” W

  

90938

Margaret Lake, AK

Revillagigedo Island (Pacific)

55° 41’ 14” N, 131° 36’ 24” W

  

90946

Margaret Lake, AK

Revillagigedo Island (Pacific)

55° 41’ 14” N, 131° 36’ 24” W

  

91504

Flynn Creek, OR

Coastal Range (Pacific)

44° 31’ 30” N, 123° 51’ 44” W

  

91505

Flynn Creek, OR

Coastal Range (Pacific)

44° 31’ 30” N, 123° 51’ 44” W

Colorado River cutthroat trout

10

94736

Little Snake River, CO

Duchesne River (Colorado R.)

40° 59’ 15” N, 107° 58’ 08” W

O. c. pleuriticus

 

130805

Muddy Creek, WY

Blacks Fork River (Colorado R.)

41° 10’ 20’ N, 110° 39’ 12” W

  

134410

North Elk Creek, CO

White River (Colorado R.)

39° 54’ 54” N, 107° 40’ 18” W

  

134387

Avintaquin Creek, UT

Yampa River (Colorado R.)

40° 07’ 26” N, 110° 44’ 25” W

  

135182

White River, UT

Price River (Colorado R.)

39° 55’ 26” N, 111° 03’ 07” W

  

134518

Cutthroat Creek, CO

Colorado River

37° 06’ 18” N, 106° 41’ 34” W

  

134537

Navajo River, CO

San Juan River (Colorado R.)

37° 11’ 55” N, 106° 39’ 49” W

  

134658

Steelman Creek, CO

Williams Fork (Colorado R.)

39° 45’ 24” N, 105° 55’ 57” W

  

134688

Cabin Creek, CO

Ranch Creek (Colorado R.)

39° 58’ 25” N, 105° 44’ 30” W

  

134748

Fryingpan River, CO

Roaring Fork River (Colorado R.)

39° 22’ 01” N, 107° 01’ 58” W

Greenback cutthroat trout

10

131909

Como Creek, CO

Arkansas River (Missouri R.)

38° 32’ 02” N, 106° 14’ 17” W

O. c. stomias

 

132038

South Prong Hayden Creek, CO

Arkansas River (Missouri R.)

38° 18’ 47” N, 105° 49’ 25” W

  

179073

Lower Bear Creek, CO

Arkansas River (Missouri R.)

38° 48’ 33” N, 104° 54’ 18” W

  

180022

Beaver Creek, UT

Colorado River

38° 21’ 17” N, 109° 15’ 48” W

  

179085

North Taylor Creek, CO

Arkansas River (Missouri R.)

38° 07’ 14” N, 105° 36’ 15” W

  

142903

Coon Creek, CO

Plateau Creek (Colorado R.)

39° 05’ 49” N, 108° 07’ 16” W

  

134692

Cabin Creek, CO

Ranch Creek (Colorado R.)

39° 58’ 25” N, 105° 44’ 30” W

  

179022

Severy Creek, CO

Arkansas River (Missouri R.)

38° 52’ 33” N, 105° 02’ 53” W

  

78265

West Antelope Creek, CO

Gunnison River (Colorado R.)

38° 35’ 12” N, 106° 59’ 59” W

  

187526

Carr Creek, CO

Colorado River

39° 35’ 09” N, 108° 32’ 03” W

Lahontan Basin cutthroat trout

10

96518

Doudy Pond, UT*

(Pyramid Lake) (Lahontan)

41° 01’ 17” N, 113° 58’ 12” W

O. c. henshawi

 

96517

Doudy Pond, UT*

(Pyramid Lake) (Lahontan)

41° 01’ 17” N, 113° 58’ 12” W

O. c. humboldtensis

 

90414

Coyote Creek, NV

Humboldt River (Lahontan)

40° 58’ 42” N, 116° 12’ 18” W

  

182066

Baker Lake, NV

Baker Creek (Bonneville)

38° 57’ 27” N, 114° 18’ 31” W

  

95362

Virgin Creek, NV

Alvord Basin

41° 37’ 36” N, 119° 09’ 15” W

  

97748

Segunda Creek, NV

Humboldt River (Lahontan)

40° 31’ 59” N, 115° 29’ 10” W

  

90741

McDermitt Creek, OR

Quinn River (Lahontan)

42° 00’ 20” N, 118° 00’ 55” W

  

91109

Indian Creek, NV

Humboldt River (Lahontan)

40° 19’ 37” N, 116° 43’ 42” W

  

90414

Coyote Creek, NV

Humboldt River (Lahontan)

41° 19’ 42” N, 116° 33’ 02” W

  

91162

Mahogany Creek, NV

Summit Lake

41° 31’ 01” N, 118° 57’ 24” W

Rio Grande cutthroat trout

10

57036

Torcido Creek, CO

Rio Grande

37° 45’ 51” N, 105° 21’ 35” W

O. c. virginalis

 

90712

Peralta Creek, NM

Rio Grande

35° 41’ 33” N, 106° 28’ 02” W

  

99839

Little Vermejo, NM

Canadian River (Mississippi R.)

36° 59’ 18” N, 105° 08’ 04” W

  

99858

Middle Fork Carnero Creek, CO

Rio Grande

37° 58’ 55” N, 106° 25’ 32” W

  

90714

Peralta Creek, NM

Rio Grande

35° 41’ 33” N, 106° 28’ 02” W

  

99862

Middle Fork Carnero Creek, CO

Rio Grande

37° 58’ 55” N, 106° 25’ 32” W

  

99844

Little Vermejo, NM

Canadian River (Mississippi R.)

36° 59’ 18” N, 105° 08’ 04” W

  

57045

Ventero Creek, NM

Rio Grande

36° 59’ 49” N, 105° 27’ 58” W

  

99841

Little Vermejo, NM

Canadian River (Mississippi R.)

36° 59’ 18” N, 105° 08’ 04” W

  

90732

Peralta Creek, NM

Rio Grande

35° 41’ 33” N, 106° 28’ 02” W

Westslope cutthroat trout

10

239020

Black Bear, MT

South Fork Flathead River

47° 44’ 41” N, 113° 23’ 00” W

O. c. lewisi

 

239024

White Gulch, MT

Missouri River

46° 37’ 10” N, 111° 28’ 51” W

  

187969

Bull River, BC

Kootenay River (Columbia R.)

49° 33’ 58” N, 115° 19’ 26” W

  

181526

John Day River, OR

Columbia River

44° 16’ 57” N, 118° 32’ 43” W

  

239021

Black Bear, MT

South Fork Flathead River

47° 44’ 41” N, 113° 23’ 00” W

  

239022

McGuire, MT

Kootenai River

48° 41’ 20” N, 115° 16’ 22“ W

  

239023

McGuire, MT

Kootenai River

48° 41’ 20” N, 115° 16’ 22“ W

  

239025

White Gulch, MT

Missouri River

46° 37’ 10” N, 111° 28’ 51” W

  

244201

Crazy Creek, BC

South Thompson River

51° 01’ 43” N, 124° 33’ 31” W

  

244202

Bow River, BC

South Saskatchewan River

51° 36’ 37” N, 116° 07’ 56” W

Yellowstone cutthroat trout

10

133863

East Tensleep Creek, WY

Bighorn River (Missouri R.)

44° 12’ 11” N, 107° 09’ 53” W

O. c. bouvieri

 

136780

Glade Creek, WY

Upper Snake River (Columbia)

44° 05’ 40” N, 110° 43’ 59” W

  

136834

Willow Creek, WY

Lower Salt River

42° 50’ 45” N, 110° 52’ 54” W

  

136668

North Fork Horse Creek, WY

Upper Snake River (Columbia)

43° 22’ 51” N, 110° 37’ 43” W

  

141843

Forest Creek, WY

Upper Snake River (Columbia)

44° 10’ 14” N, 110° 35’ 49” W

  

141946

Sickle Creek, WY

Upper Snake River (Columbia)

44° 11’ 28” N, 110° 23’ 05” W

  

142366

Elk Antler Creek, WY

Yellowstone River (Missouri R.)

44° 36’ 01” N, 110° 28’ 39” W

  

90212

Hatchery Creek, WY

Yellowstone River (Missouri R.)

44° 32’ 57” N, 110° 24’ 03” W

  

179112

Mill Creek, WY

Yellowstone River (Missouri R.)

44° 26’ 59” N, 107° 27’ 09” W

  

179114

Mill Creek, WY

Yellowstone River (Missouri R.)

44° 26’ 59” N, 107° 27’ 09” W

Rainbow Trout (Oncorhynchus mykiss)

     

Rainbow Trout

1

187968

Rio Fuerte, Mexico

Gulf of California

Unknown

Columbia Redband Trout

3

142374

McCoy Creek, OR

Harney-Malheur Basin

42° 58’ 33” N, 118° 42’ 32” W

  

98251

West Fork Bruneau River, NV

Snake River (Columbia R.)

41° 56’ 02” N, 115° 40’ 29” W

  

94217

West Fork Jarbridge River, NV

Snake River (Columbia R.)

41° 48’ 57” N, 115° 24’ 38” W

Steelhead

2

93748

Kootenay River, BC

Columbia River

49° 19’ N, 117° 39’ W

  

97060

Midway Hatchery, UT

N/A

 
  1. Cutthroat trout individuals used in this study are listed along with sampling locality information for each. Individuals that were included on the 454 plate are highlighted with bold font. All individuals were used to validate/verify SNPs using Fluidigm nanofluidic chip arrays.
  2. *Transplanted population – source population was Morrison Creek, NV, which is believed to be a Pyramid Lake strain of Lahontan cutthroat.