Table 2 The number of SNPs from 96-plex validation detected using BWA/Samtools approach
Individual | No. of successful assays | Number of SNPs also detected by BWA | Number of SNPs not detected by BWA | Sensitivity | False negative | ||
|---|---|---|---|---|---|---|---|
| Â | Â | True SNPs | Total | True SNPs | Total | Â | Â |
AA3 | 25 | 5 (45.5%) | 11 | 2 | 14 | 71.4% | 28.6% |
AA6 | 28 | 14 (77.8%) | 18 | 5 | 10 | 66.7% | 33.3% |
AM20 | 28 | 12 (70.6%) | 17 | 3 | 11 | 80.0% | 20.0% |
AM22 | 26 | 5 (33.0%) | 15 | 3 | 11 | 62.5% | 37.5% |