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Table 2 Correlations

From: A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays

Design

Number of chips

Number of probe spots per chip

Number of parameters that were fit to each chip

Number of PCR products

Mean correlation between expected and observed probe intensities

cwrs-07

40

230640

21

9

0.765 ± 0.038

cwrs-39

40

230240

20

8

0.605 ± 0.020

cwrs-51

40

226592

23

11

0.730 ± 0.021

cwrs-53

40

230432

21

9

0.714 ± 0.016

cwrs-63

40

229280

21

9

0.666 ± 0.028

cwrs-67

40

231776

18

6

0.629 ± 0.029

fmr1

62

80408

16

4

0.762 ± 0.081

  1. Table2: Summary for each chip design.