Table 3 Error model statistics for Illumina v4, Illumina v5, and Roche/454

Overall (%)

0.99

2.40

0.28

0.34

0.12

A (%)

1.23

2.86

0.25

0.33

0.14

T (%)

0.91

2.19

0.34

0.39

0.10

G (%)

0.78

2.00

0.23

0.23

0.12

C (%)

1.12

2.78

0.29

0.41

0.12

1^st most freq. (%)

GGGT A - > GGGG A (4.47)

ACAA G - > ACAC G (3.94)

GGGT C - > GGGG C (5.85)

AGGT G- > AGGG G (3.69)

AAAC A - > AAAA A (1.07)

2^nd most freq. (%)

AGGT G - > AGGG G (3.71)

AGGT G - > AGGG G (3.29)

CTCG G - > CTCC G (5.83)

CGGT G - > CGGG G (2.7)

CCCA C - > CCCC C (1.02)

3^rd most freq. (%)

CCCA A - > CCCC A (3.15)

CCCA A - > CCCC A (3.24)

GGGC G - > GGGG G (4.06)

GGGT G - > GGGG G (2.45)

CCCC G - > CCCA G (0.75)

4^th most freq. (%)

CGGT G - > CGGG G (3.06)

GGGT A - > GGGG A (3.14)

CGGT G - > CGGG G (3.65)

GGGT C - > GGGG G (2.03)

AAAG G - > AAAA G (0.70)

5^th most freq. (%)

GGGT G - > GGGG G (2.71)

ACAA A - > ACAC A (2.97)

GGGT A - > GGGG A (3.20)

CGGT C - > CGGG C (1.98)

AGGA A - > AGGG A (0.52)

Insertions (%)

0.000723

0.000935

0.000622

0.001300

0.290000

Deletions (%)

0.000434

0.000482

0.000353

0.000484

0.270000