Table 1 NB-LRR-specific amino acid motifs identified with psp-gen MEME [56].
From: Identification and localisation of the NB-LRR gene family within the potato genome
Motifa | Sequenceb | Domain | Group | similar to | Reference |
|---|---|---|---|---|---|
motif 1 | PIWGMGGVGKTTLARAVYNDP | NB-ARC | CNL/TNL | P-loop | [6] |
motif 2 | LKPCFLYCAIFPEDYMIDKNKLIWLWMAE | NB-ARC | CNL | RNBS-D | [6] |
motif 3 | CGGLPLAIKVWGGMLAGKQKT | NB-ARC | CNL/TNL | GLPL | [6] |
motif 4 | YLVVLDDVWDTDQWD | NB-ARC | CNL/TNL | Kin-2 | |
motif 5 | NGSRIIITTRNKHVANYMCT | NB-ARC | CNL/TNL | RNBS-B | [6] |
motif 6 | HFDCRAWVCVSQQYDMKKVLRDIIQQVGG | NB-ARC | CNL | RNBS-A | [6] |
motif 7 | CRMHDMMHDMCWYKAREQNFV | linker | CNL/TNL | MHDV | [6] |
motif 8 | MEDVGEYYFNELINRSMFQPI | linker | CNL/TNL | - | Â |
motif 9 | LIHLRYLNLSGTNIKQLPASI | LRR1 | CNL/TNL | Motif1 LDL | [6] |
motif 10 | LSHEESWQLFHQHAF | NB-ARC | CNL/TNL | RNBS-C | [6] |
motif 11 | MPNLETLDIHNCPNLEEIP | LRR | CNL/TNL | - | Â |
motif 12 | IMPVLRLSYHHLPYH | NB-ARC | CNL/TNL | - | Â |
motif 13 | QIVIPIFYDVDPSDVRHQTGSFGEAFWKHCSR | TIR | TNL | TIR-3 | [6] |
motif 14 | AIKDIQEQLQKVADRRDRNKVFVPHPTRPIAIDPCLRALYAEATELVGIY | monocot | - | - | Â |
motif 15 | KNYATSRWCLNELVKIMECKE | TIR | TNL | TIR-2 | [6] |
motif 16 | DAAYDAEDVIDSFKYHA | pre-NB | CNL | EDVID | [24] |
motif 17 | FAIPKLGDFLTQEYYLHKGIKKEIEWLKRELEFMQA | pre-NB | CNL | - | Â |
motif 18 | KYDVFLSFRGADTRRTFTSHLYEALKNRGINTF | TIR | TNL | TIR-1 | [6] |
motif 19 | IKMVEITGYRGTRFPNWMGHPVYCNMVSISIRNCKNCSCLP | LRR | CNL/TNL | - | Â |
motif 20 | ETSSFELMDLLGERWVPPVHLREFKSFMPSQLSALRGWIQRDPSHLSNLS | monocot | - | - | Â |