Table 3 Empirical p-values estimated from 1000 permutations based on weighting score matrix 3.

q < 0.9

0.393 (6399)

0.367 (1863)

0.603 (399)

0.191 (866)

0.052 (178)

q < 0.8

0.525 (469)

0.292 (415)

0.441 (163)

0.310 (199)

0.131 (108)

q < 0.7

0.495 (8)

0.228 (164)

0.627 (5)

0.208 (117)

0.118 (72)

q < 0.6

0.286 (5)

N/A

N/A

0.225 (42)

0.093 (53)

q < 0.5

0.113 (5)

N/A

N/A

0.122 (39)

N/A

q < 0.4

0.012 (5)

N/A

N/A

0.101 (27)

N/A