Table 4 Improvement in GWAS-based association FDR as multi-species gene ranking score increases.
FDR q-value | Total SNPs passing QC | Scored | Score ≥1 | Score ≥1.5 | Score ≥2 | Score = 2.5 |
|---|---|---|---|---|---|---|
All SNPs | 547920 | 91774 | 18988 | 7948 | 2293 | 210 |
< 0.9 | 48016 | 6399 | 1863 | 399 | 866 | 178 |
< 0.8 | 643 | 469 | 415 | 163 | 199 | 108 |
< 0.7 | 6 | 8 | 164 | 5 | 117 | 72 |
< 0.6 | 0 | 5 | 0 | 0 | 42 | 53 |
< 0.5 | 0 | 5 | 0 | 0 | 39 | 0 |
< 0.4 | 0 | 5 | 0 | 0 | 27 | 0 |
< 0.3 | 0 | 0 | 0 | 0 | 0 | 0 |
< 0.2 | 0 | 0 | 0 | 0 | 0 | 0 |
< 0.1 | 0 | 0 | 0 | 0 | 0 | 0 |
< 0.05 | 0 | 0 | 0 | 0 | 0 | 0 |
Min q | 0.605 | 0.369 | 0.667 | 0.636 | 0.357 | 0.526 |