GLAD4U: deriving and prioritizing gene lists from PubMed literature

BMC Genomics

Table 2 Comparison of different prioritization methods

	Apoptosis	Cell Adhesion	DNA Repair	Hypertension	Obesity	Schizophrenia
GLAD4U Counts
AP	0.4939	0.4611	0.6670	0.3947	0.5698	0.4601
Precision at k = 50	0.8600	0.8000	0.8800	0.4800	0.7800	0.5400
Precision at k = 100	0.8300	0.7300	0.8100	0.3800	0.5500	0.4200
GLAD4U Hypergeometric
AP	0.4942	0.5723	0.8139	0.4564	0.4782	0.4280
Precision at k = 50	0.9400	0.9000	1.0000	0.5800	0.6200	0.4800
Precision at k = 100	0.9000	0.8500	0.9700	0.3900	0.5200	0.4400
EBIMed
AP	0.1567	0.1256	0.3517	0.1336	0.2673	0.2318
Precision at k = 50	0.6200	0.4800	0.8400	0.3137	0.5652	0.4423
Precision at k = 100	0.5980	0.4848	0.6700	0.2821	0.1586	0.3200

ISSN: 1471-2164