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Table 3 First 10 genes retrieved by GLAD4U and not listed in the gold standard lists

From: GLAD4U: deriving and prioritizing gene lists from PubMed literature

Rank

Entrez-Gene ID

(Gene symbol)

Score

PMIDs*

Apoptosis

41

4193 (MDM2)

53.5212

21051655, 21051533, 20849854, 20849851, 20832750, 20822933, 20708156, 20659896, 20657550, 20644561

48

1432 (MAPK14)

40.8288

20736797, 20573801, 20558744, 20473571, 20463961, 20430109, 20393480, 20345980, 20307495, 20299663

49

4609 (MYC)

37.27.98

20714214, 20598117, 20596624, 20573831, 20564213, 20515470, 20232342, 20071475, 19996270, 19966300

54

6774 (STAT3)

35.2695

20562100, 20514402, 20507639, 20490331, 20459702, 20447714, 20213502, 20197401, 20164027, 20154216

77

5580 (PRKCD)

23.3017

20548952, 20547768, 20471435, 20093486, 19932628, 19917613, 19875824, 19833733, 19808702, 19747914

78

29126 (CD274)

23.1218

20636820, 20617899, 20587542, 20506224, 20445553, 20363965, 19916867, 19826049, 19811426, 19794071

79

142 (PARP1)

22.9308

20940411, 20665026, 20644561, 20629644, 20564216, 20453000, 20388712, 20181890, 20177052, 20072652

86

406991 (MIR21)

18.9856

20813833, 20515755, 20514462, 20447717, 20404348, 20372781, 20371612, 20346171, 20153722, 20148895

96

7295 (TXN)

16.1886

20619274, 20430109, 20298786, 20103619, 19671194, 19566940, 19328186, 19120277, 18983687, 18848838

100

3621 (ING1)

15.3784

19085961, 18836436, 18801192, 18691180, 18655775, 18533182, 18388957, 17585055, 17379210, 16607280

Hypertension

10

5972 (REN)

61.9237

20925572, 20662730, 20577119, 20537141, 20429690, 20223792, 20160196, 19891555, 19673942, 19536175

12

3291 (HSD11B2)

45.7032

20597806, 19811365, 19150652, 18837962, 18573267, 18178212, 17551100, 16872738, 16778331, 16109323

14

4879 (NPPB)

36.9570

20713912, 20368210, 20350538, 20346360, 20234137, 20142024, 20113292, 20102554, 20087954, 20083731

17

4524 (MTHFR)

32.2080

21072525, 21060006, 20960113, 20852445, 20812180, 20717043, 20669348, 20637366, 20592457, 20479155

19

1401 (CRP)

31.9446

21044781, 20805569, 20733302, 20683147, 20676960, 20346360, 20339115, 20184533, 20074254, 20068351

20

4878 (NPPA)

31.6082

20577119, 20543198, 20368210, 20346360, 20137368, 19635983, 19479237, 19430483, 19346663, 19330901

21

155 (ADRB3)

28.4824

20831043, 20144152, 20044737, 19842096, 19779464, 19479237, 19131662, 18724972, 18510051, 18088254

24

1584 (CYP11B1)

24.8304

20708777, 20339375, 19820005, 19567537, 19082699, 18663314, 18294861, 17980006, 17296872, 17121536

27

59272 (ACE2)

21.4649

20831027, 20813695, 20679547, 20349406, 20160196, 20117991, 19926873, 19684612, 19289653, 19286756

29

9370 (ADIPOQ)

19.6898

21044781, 20593932, 20552610, 20528971, 20516205, 20443850, 20385503, 20376890, 20166815, 20150538

  1. * Only the 10 most recent supporting publications are shown here. See additional files 1 and 2 for the complete list of false-positive genes and their corresponding supporting publications.