Table 2 Analyses of associations between markers per exact Fisher test for the different genetic groups considered
Diversity group | Number of individuals | Number of polymorphic markers | Number of 2-by-2 tests | Limit(5%)after Bonferroni’s correction | Number of significant associations(exact test) | Number of significant within-linkage group associations and percentage compared to the total significant associations | Number of significant between-linkage group associations and percentage compared to the total significant associations | Within-linkage group: Between-linkage group ratio | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
All genotypes | 356 | 108 | 5778 | 8.65351E-06 | 5684 | 98% | 680 | 12 % | 5004 | 88 % | 0.14 |
C | 92 | 98 | 4753 | 1.05197E-05 | 72 | 2% | 62 | 86 % | 10 | 14 % | 6.20 |
SG1 | 16 | 93 | 4278 | 1.16877E-05 | 177 | 4% | 29 | 16 % | 148 | 84 % | 0.20 |
SG2 | 85 | 107 | 5671 | 8.81679E-06 | 389 | 7% | 144 | 37 % | 245 | 63 % | 0.59 |
Pélézi | 35 | 74 | 2701 | 1.85117E-05 | 116 | 4% | 85 | 73 % | 31 | 27 % | 2.74 |
G | 128 | 97 | 4656 | 1.07388E-05 | 483 | 10% | 99 | 20 % | 384 | 80 % | 0.26 |
G sub1 | 54 | 85 | 3570 | 1.40056E-05 | 73 | 2% | 49 | 67 % | 24 | 33 % | 2.04 |
G sub2 | 17 | 73 | 2628 | 1.90259E-05 | 38 | 1% | 32 | 84 % | 6 | 16 % | 5.33 |
G sub3 | 57 | 96 | 4560 | 1.09649E-05 | 36 | 1% | 20 | 56 % | 16 | 44% | 1.25 |