Table 4 Pseudo-r 2 values for logistic regressions for significantly and suggestively associated SNPs
| Â | Genotyping arrays only | Genotyping arrays and annotations | ||
|---|---|---|---|---|
|  | McFadden | McKelvey & Zavoina’s | McFadden | McKelvey & Zavoina’s |
Significant 1 (no TSS) | 0.07 | 0.14 | 0.11 | 0.28 |
Significant 2 (with TSS) | 0.07 | 0.14 | 0.12 | 0.42 |
Significant 2 (without TSS) | 0.07 | 0.14 | 0.11 | 0.28 |
Suggestive 1 (no TSS) | 0.09 | 0.16 | 0.09 | 0.18 |
Suggestive 2 (with TSS) | 0.09 | 0.16 | 0.09 | 0.18 |
Suggestive 2 (without TSS) | 0.09 | 0.16 | 0.09 | 0.18 |