Table 4 Major MEME motifs in predicted cucumber TIR-NBS family of proteins
Domain | Motif number | motif | Motif sequence* | Length | E-Value |
|---|---|---|---|---|---|
TIR | Motif03 | T1 | sxxxwxYDVFLSFRGeDTRxnFtxhLxxALrxxGi/vnvFi/rDx | 41 | 1.1e-238 |
| Â | Motif06 | T2 | CLxELVKIxxCkkxxxQxVLPv/iFYkv/iDPSxVRKQx | 35 | 2.8e-187 |
| Â | Motif13 | T3 | xxkvqxWRxAl/mtxa/vanlsGWxlxxxxxex | 29 | 5.4e-095 |
| Â | Motif18 | T4 | xIsxxLxkxIxxSxxsiVi/vfSexYAsSxW | 29 | 4.7e-090 |
NBS | Motif01 | P-loop | xGm/iGGIGKTTl/iAKalYnxixxxFexcCFL | 29 | 3.6e-378 |
| Â | Motif15 | RNBS-A-TIR | gLvxLQxxLLxxilx | 15 | 1.5e-082 |
| Â | Motif02 | RNBS-B | gxdWFGxGSr/kiIxTTRnxhLLxxxxf | 26 | 2.4e-294 |
| Â | Motif05 | Kinase-2 | iIr/kxRLxxKKvLiv/iLDDVDxxxQLxaLa/rG | 29 | 1.8e-261 |
| Â | Motif07 | RNBS-C | iLFLFSwHAFxxxhPsxxYld | 21 | 4.7e-178 |
| Â | Motif04 | GLPL | avxYckGLPLALxvLGSfLxx | 21 | 7.1e-205 |
| Â | Motif09 | RNBS-D-TIR | keIFIdIsCxFvGexxxxvxxxl | 23 | 1.5e-138 |
| Â | Motif16 | TNBS-1 | xlxxxixxxLxiSy/fdgLexxx | 21 | 1.2e-087 |
| Â | Motif08 | MHDL | Xxxxr/kxxMHdLIqxMGxxIvx | 21 | 1.0e-160 |
LRR&C-terminal | Motif19 | L1 | xxxkrsRLWlxxdxxxxlxxxxgxxxxxxix | 31 | 4.1e-073 |
| Â | Motif20 | L2 | S/pxxLRwxnWhGf/yPxxxLPxxfxmxxLxeLxLpxSxixxfw | 40 | 3.9e-066 |
| Â | Motif10 | L3 | LxxxPDl/fSxaxNLexLxLxxCxxLxxxHxSv/igsL | 34 | 9.8e-178 |
| Â | Motif14 | L4 | lxlxxcxnlxxlPSxLxLKSLxxLxlxxCxkxExxPxfxenMKSLxxlxl | 50 | 7.7e-092 |
| Â | Motif12 | L5 | xtxixxLxxSIxxLxxLxxLxlxxCxxLxxLPxxIxxLxsL | 41 | 1.8e-144 |
| Â | Motif17 | L6 | TxLxLxxCn/kIt/sNxdFLEtlxxvapsLxxLxLSxNxFc/sxLPS | 41 | 4.6e-082 |
| Â | Motif11 | L7 | l/ixxf/lxsLxxLlxnCxLxxIpklPxxlxxxxaxgx | 36 | 3.3e-136 |