Table 2 Protein groups (FunCat) that exhibited significant up- and/or down-regulation during mycoparasitic interaction in at least one of the three Trichoderma spp.*
From: Comparative transcriptomics reveals different strategies of Trichodermamycoparasitism
FunCat category | FunCat number | Annotation | T. atroviride | T. virens | T. reesei | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11 865 genes | 12 428 genes | 9 143 genes | ||||||||||||
Total involved | Up down | Up/down (%) | Total involved | Up down | Up/down (%) | Total involved | Up down | Up/down (%) | ||||||
metabolism | 01_05_01_01_09 | 2-oxoglutarate dependent dioxygenase | 3 | 0 | 3 | 0 | 1 | 1 | 0 | n.a. | 0 | 0 | 0 | n.a. |
| Â | 01_04 | acid phosphatase | 4 | 4 | 0 | n.a. | 1 | 1 | 0 | n.a. | 1 | 1 | 0 | n.a. |
| Â | 01_20_05_11 | PKS | 5 | 2 | 3 | 0.7 | 1 | 0 | 1 | 0 | 4 | 2 | 2 | 1 |
| Â | 01_20_35_01_05 | flavonol reductase | 4 | 4 | 0 | n.a. | 1 | 0 | 1 | 0 | 0 | 0 | 0 | Â |
| Â | 01_20_35_01_05 | isoflavon reductase | 2 | 2 | 0 | n.a. | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 |
| Â | 01_20_36 | NRPS | 2 | 0 | 2 | 0 | 4 | 0 | 4 | 0 | 2 | 0 | 2 | 0 |
| Â | 01_25_01 | GH glycosyl hydrolase | 51 | 10 | 41 | 0.2 | 5 | 4 | 1 | 4 | 36 | 34 | 2 | 17 |
| Â | 01_25_03 | protease | 15 | 13 | 2 | 6.5 | 3 | 1 | 2 | 0.5 | 5 | 2 | 3 | 0.7 |
| Â | 01_25_07 | lipase/esterase | 6 | 2 | 4 | 0.5 | 2 | 0 | 2 | 0 | 3 | 1 | 2 | 0.5 |
| Â | 01_25_07 | CE carbohydrate esterase | 3 | 1 | 2 | 0.5 | 0 | 0 | 0 | 0 | 3 | 3 | 0 | n.a. |
transcription | 11_02_03_04 | C2H2 transcriptional regulator | 5 | 2 | 3 | 0.7 | 5 | 0 | 5 | 0 | 9 | 3 | 6 | 0.5 |
11_02_03_04 | transcription factor | 8 | 1 | 7 | 0.1 | 0 | 0 | 0 | n.a. | 0 | 0 | 0 | n.a. | |
11_02_03_04 | Zn2Cys6 transcriptional regulator | 11 | 3 | 8 | 0.4 | 3 | 0 | 3 | 0 | 5 | 2 | 3 | 0.7 | |
protein fate | 14_07_04 | GCN5-N-acetyltransferase | 6 | 3 | 3 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 0 | n.a. |
14_07_09 | SAM-dependent methyltransferase | 4 | 4 | 0 | n.a. | 3 | 0 | 3 | 0 | 3 | 2 | 1 | 2 | |
protein with binding functions | 16_01 | ankyrin | 2 | 1 | 0 | n.a. | 2 | 0 | 2 | 0 | 0 | 0 | 0 | n.a. |
16_21 | cytochrome P450 subfamily | 8 | 6 | 2 | 3 | 9 | 0 | 9 | 0 | 5 | 4 | 1 | 4 | |
16_21 | FAD-dependent monooxygenase | 11 | 8 | 3 | 2.7 | 3 | 2 | 1 | 2 | 2 | 0 | 2 | 0 | |
16_21_07 | GMC oxidoreductase | 2 | 2 | 0 | n.a. | 2 | 0 | 2 | 0 | 1 | 0 | 1 | 0 | |
16_21_07 | short chain dehydrogenase/reductase | 8 | 5 | 3 | 1.7 | 11 | 0 | 11 | 0 | 6 | 0 | 6 | 0 | |
cellular transport | 20_01_01 | oligopeptide transporter | 8 | 3 | 5 | 0.6 | 1 | 1 | 0 | n.a. | 3 | 1 | 2 | 0.5 |
20_01_01_01_01 | iron permease | 2 | 2 | 0 | n.a. | 0 | 0 | 0 | n.a. | 0 | 0 | 0 | n.a. | |
20_01_01_07 | inorganic phosphate transporter | 4 | 4 | 0 | n.a. | 1 | 1 | 0 | n.a. | 1 | 1 | 0 | n.a. | |
20_01_03 | monocarboxylate transporter | 3 | 3 | 0 | n.a. | 0 | 0 | 0 | n.a. | 0 | 0 | 0 | n.a. | |
20_01_07 | amino acid permease | 5 | 1 | 4 | 0.3 | 3 | 3 | 0 | n.a. | 4 | 3 | 1 | 3 | |
20_03 | MFS (major facilitator superfamily) (12 TMH) | 51 | 15 | 36 | 0.4 | 7 | 4 | 3 | 1.3 | 17 | 9 | 8 | 1.1 | |
signal transduction mechanism | 30_05_02_24 | GPCR, G-protein coupled receptor | 6 | 1 | 5 | 0.2 | 0 | 0 | 0 | n.a. | 2 | 0 | 2 | 0 |
30_05_02_24 | PTH11-type GPCR | 11 | 9 | 2 | 4.5 | 2 | 0 | 2 | 0 | 2 | 1 | 1 | 1 | |
cell rescue and defense | 32_01_05 | chaperone/heat shock protein | 0 | 0 | 0 | n.a. | 5 | 5 | 0 | n.a. | 4 | 0 | 4 | 0 |
32_07 | AAA + −type ATPase | 4 | 2 | 2 | 1 | 8 | 0 | 8 | 0 | 2 | 1 | 1 | 1 | |
32_07_05 | PDR-type multidrug transporter | 3 | 3 | 1 | 3 | 0 | 0 | 0 | n.a. | 2 | 1 | 1 | 1 | |
32_07_05 | ABC transporter | 0 | 0 | 0 | n.a. | 2 | 0 | 2 | 0 | 2 | 0 | 2 | 0 | |
32_07_05 | MDR (multidrug resistance-associated protein) | 0 | 0 | 0 | n.a. | 2 | 0 | 2 | 0 | 1 | 0 | 1 | 0 | |
32_07_07_03 | glutathione S-transferase | 3 | 3 | 0 | n.a. | 4 | 0 | 4 | 0 | 2 | 0 | 2 | 0 | |
subcellular localization | 70_01 | cell wall protein | 5 | 0 | 5 | 0 | 2 | 0 | 2 | 0 | 4 | 2 | 2 | 1 |
70_27 | SSCR (small secreted cysteine rich protein) | 8 | 8 | 0 | n.a. | 6 | 0 | 6 | 0 | 0 | 0 | 0 | n.a. | |
cell fate | 40 | HET protein | 2 | 2 | 0 | n.a. | 0 | 0 | 0 | n.a. | 1 | 0 | 1 | 0 |