Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation

Table 3 Significantly expressed genes possessing strain-specific SNPs but as of yet, undesignated a biological (KEGG) pathway

Gene	Text mining (cosine vector score)	SNP no.
S100a10	0.248	62
Slc22a150	0.0219	19
Selenbp1	0.0065	19
Mov10	0.0063	3
Ppm1j	0.0013	3
Pogz	0.0009	8
Extl2	0.0008	2
Igsf3	0.0007	177
Ptpn22	0.0006	276
Selenbp2	0.0004	21
Wdr	0.0004	1
Cd53	0.0002	92
Cttnbp2nl	0	55
Golph3l	0	34
4933421E11Rsk	0	19
Eps8l3	0	1

Genes ranked according to text-mining significance, and SNP number for each gene noted. (QTL Chromosome 3, TM3). The top candidate is highlighted in bold: S100a10 had the highest cosine vector score demonstrating maximum relevance in the literature.
Transcript profiling: Microarray data has been submitted to ArrayExpress. Accession number E-MEXP-3098.

ISSN: 1471-2164