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Table 1 Human genes identified by GWAS

From: A Drosophila functional evaluation of candidates from human genome-wide association studies of type 2 diabetes and related metabolic traits identifies tissue-specific roles for dHHEX

Region

Trait

Genes

1p32.3

LDL

TMEM61, BSND, PCSK9, USP24

1p31.3

TG

ANGPTL3*, DOCK7, ATG4C**

1p13.3

LDL

KIAA1324, SARS, CELSR2**, PSRC1, MYBPHL, SORT1

1p12

T2D

ADAM30, NOTCH2

1q42.13

TG, HDL

GALNT2

2p24.1

LDL

APOB

2p23.3

T2D

NRBP1**, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512

2p21

T2D

THADA**, PLEKHH2

2q24.3

FG

NOSTRIN*, SPC25, G6PC2, ABCB11**

3p25.2

T2D

PPARG**

3p14.1

T2D

ADAMTS9*

3q27.3

T2D

IGF2BP2*, C3orf65

5q13.3

LDL

HMGCR, COL4A3BP

6p22.3

T2D

CDKAL1

6p21.32

LDL

HLA-DPA1, COL11A2, RXRB**, SLC39A7, HSD17B8, MIR219-1, RING1**, VPS52, RPS18

7p15.2

T2D

JAZF1

7p13

FG

AEBP1, MIR4649, POLD2, MYL7, GCK**, YKT6, CAMK2B

7q11.23

TG

BAZ1B, BCL7B, TBL2, MLXIPL**, VPS37D, DNAJC30*, WBSCR22, STX1A

8p21.3

TG, HDL

LPL**

8q24.11

T2D

SLC30A8*

8q24.13

TG

TRIB1*

9p21.3

T2D

MTAP, CDKN2A, CDKN2B

9q31.1

HDL

ABCA1

10p13

T2D

NUDT5, CDC123, CAMK1D

10q23.33

T2D

IDE*, KIF11*, HHEX**

10q25.2

T2D

TCF7L2**

11p15.1

T2D

NUCB2*, NCR3LG1, KCNJ11**, ABCC8*

11p11.2

T2D

EXT2, ALX4

11q23.3

TG

BUD13, ZNF259, APOA5, APOA4, APOC3, APOA1, SIK3

12q15

T2D

TSPAN8, LGR5

12q23.3

HDL

MYO1H, KCTD10*, UBE3B, MMAB, MVK**

15q21.3

HDL

LIPC**

16q12.1

T2D

RPGRIP1L, FTO

16q12.2

HDL

CETP, NLRC5, SLC12A3**, HERPUD1, MIR138-2

18q21.1

HDL

LIPG**, ACAA2

19p13.2

LDL

SMARCA4, LDLR, SPC24, KANK2

19p13.11

TG, LDL

GATAD2A, TSSK6, NDUFA13**, YJEFN3, CILP2, PBX4, LPAR2, GMIP, ATP13A1**

19q13.33

LDL

BCL3, CBC, BCAM, PVRL2, TOMM40**, APOE, APOC1, APOC4, APOC2, CLPTM1, RELB**

  1. List of all human genes located near the SNPs considered in the study. Asterisks indicate genes with Drosophila orthologs that function in sucrose tolerance in Drosophila; doubled asterisks indicate strong hits. Italicized genes were not evaluated in the Drosophila sucrose-intolerance screen, mostly because they lack Drosophila orthologs. References and more detailed experimental results are in Additional file 1: Table S1.