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Figure 1 | BMC Genomics

Figure 1

From: Quality assessment and data handling methods for Affymetrix Gene 1.0 ST arrays with variable RNA integrity

Figure 1

Array quality metrics. a) Raw coefficient of variation across all probes by sample, the red line represents our chosen threshold which is calculated as 2SD from the mean of CVs for arrays with RINs > 6. b) Raw perfect match mean - background mean c) Global normalised unscaled errors (GNUSE) across probes for each array. Samples that were flagged during quality assessment are highlighted in red.

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BMC Genomics

ISSN: 1471-2164

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