Table 1 Total spectra searched and identified from whole genome, GENCODE V7 transcript and protein searches

Total spectra searched

Databases (size)

# of distinct spectra mapped (# of distinct spectra mapped when only best match considered)

# of distinct peptides identified (# of distinct peptides when only best match considered)

# of distinct genomic loci/proteins/transcripts identified (# of distinct loci/transcripts/proteins when only best match considered)