Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions

BMC Genomics

Table 2 Unique GENCODE V7 non-exonic peptides and their overlap with different expression data and predicted exons

Total non-exonic peptides	Data types	Number of distinct peptides that overlap
420	HAIB RNA-Seq	268
	GENSCAN gene predictions	215
	Human ESTs	175
	Burge RNA-Seq	120
	Ensembl exons	281
	UW Affy Exon Array	196
	Duke Affy Exon Array	221

Results presented are at a 1% FDR. Information about each dataset can be found with its individual track on the UCSC Genome Browser.

ISSN: 1471-2164