Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil

BMC Genomics

Table 1 High quality SNP discovery results in ten lentil lines against the reference genotype CDC Redberry

Line	Type	Origin¹	Adaptation²	Total 454 reads	Reference assembly	Contigs with SNPs	Total SNPs	Average read depth
CDC Redberry	Small red	Canada	NT	1,034,231	27,921	N/A	N/A	N/A
CDC Robin	Small red	Canada	NT	394,707	N/A	2177	4727	12
964A-46	Large green	Canada	NT	370,621	N/A	1967	4138	10
Eston	Small green	Turkey	NT	410,494	N/A	1240	2690	17
PI 320937	Black	Germany	NT	419,342	N/A	2003	4276	11
LC8602303T	Small red	USA	MED	366,006	N/A	2762	6371	13
ILL 5588	Small red	Jordan	MED	217,539	N/A	1684	3740	8
CDC Milestone	Small green	Canada	NT	592,086	N/A	1569	3390	31
ILL 8006	Small red	Bangladesh	STS	523,958	N/A	4304	9797	15
L01-827A	L. ervoides	³	MED	218,657	N/A	3264	10,793	10
IG 72815	L. ervoides	ICARDA	MED	370,513	N/A	5847	19,946	10
Total				4,918,154		11,050⁴	44,879⁴

All lines are L. culinaris except the last two, which are L. ervoides.
^1. Origin indicates where line was originally collected or developed through hybridization and selection.
^2. NT – northern temperate; MED – Mediterranean; STS – sub-tropical savannah.
^3. Single plant selection from IG 72847.
^4. Total non-redundant set of contigs and SNPs detected across all genotypes, respectively.

ISSN: 1471-2164